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ASM70822v1

Organism name:
Nipponia nippon (crested ibis)
Isolate:
BGI_Y956
Sex:
male
BioSample:
SAMN02596464
BioProject:
PRJNA232572
Submitter:
College of Medicine and Forensics, Xi'an Jiaotong University
Date:
2014/06/16
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000708225.1 (latest)
RefSeq assembly accession:
GCF_000708225.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JMFH01
Assembly method:
SOAPdenovo v. 1.6
Genome coverage:
105x
Sequencing technology:
Illumina HiSeq

IDs: 187291 [UID] 1136368 [GenBank] 1341618 [RefSeq]

See Genome Information for Nipponia nippon

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added to this genome in September, 2014.

Global statistics

Total sequence length1,223,863,029
Total ungapped length1,189,447,576
Gaps between scaffolds0
Number of scaffolds59,555
Scaffold N505,211,696
Scaffold L5066
Number of contigs130,030
Contig N5029,116
Contig L5012,209
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)130,030

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,223,846,29759,5541,189,430,8445,211,69670,4750
MoleculeTotal
Length
Mitochondrion MT16,732