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ASM72450v1

Organism name:
Enterobacter cloacae ECNIH2 (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ECNIH2
BioSample:
SAMN02713682
BioProject:
PRJNA202893
Submitter:
NISC
Date:
2014/07/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000724505.1 (latest)
RefSeq assembly accession:
GCF_000724505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2
Genome coverage:
109x
Sequencing technology:
Pacific Biosciences RS II

IDs: 195451 [UID] 1164268 [GenBank] 1661448 [RefSeq]

See Genome Information for Enterobacter cloacae

There are 1008 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/19/2023 09:00:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,401
CDSs (total)::5,284
Genes (coding)::5,143
CDSs (with protein)::5,143
Genes (RNA)::117
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::87
ncRNAs::5
Pseudo Genes (total)::141
CDSs (without protein)::141
Pseudo Genes (ambiguous residues)::0 of 141
Pseudo Genes (frameshifted)::49 of 141
Pseudo Genes (incomplete)::94 of 141
Pseudo Genes (internal stop)::17 of 141
Pseudo Genes (multiple problems)::15 of 141
Pseudo Genes (short protein)::1 of 141
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,502,685
Total ungapped length5,502,685
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000724515.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP008823.1=NZ_CP008823.1
Plasmid pKEC-39cCP008824.1=NZ_CP008824.1
Plasmid pKPC-f91CP008826.1=NZ_CP008826.1
Plasmid pKPC-272CP008825.1=NZ_CP008825.1

Assembly statistics

MoleculeTotal
Length
All5,502,685
Chromosome 4,852,980
Plasmid pKEC-39c319,976
Plasmid pKPC-f9147,290
Plasmid pKPC-272282,439

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter cloacae ECNIH2Enterobacter cloacae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_021469225.1Enterobacter cloacaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729725.1Enterobacter hormaecheitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.0874.3973.06
Best-match type99.0178.6890.53

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%