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ASM73401v1

Organism name:
Thermodesulfobacterium commune DSM 2178 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 2178
BioSample:
SAMN02934663
BioProject:
PRJNA12531
Submitter:
TIGR
Date:
2014/07/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000734015.1 (latest)
RefSeq assembly accession:
GCF_000734015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera v. July-2006
Sequencing technology:
Sanger dideoxy sequencing

IDs: 200351 [UID] 1179228 [GenBank] 1515798 [RefSeq]

See Genome Information for Thermodesulfobacterium commune

There are 10 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/25/2024 00:42:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,809
CDSs (total)::1,757
Genes (coding)::1,743
CDSs (with protein)::1,743
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::2 of 14
Pseudo Genes (incomplete)::8 of 14
Pseudo Genes (internal stop)::4 of 14
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,764,045
Total ungapped length1,764,045
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000734025.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP008796.1=NZ_CP008796.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,764,045

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermodesulfobacterium commune DSM 2178Thermodesulfobacterium commune

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000746435.1Thermodesulfobacterium commune DSM 2178type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000746435.1Thermodesulfobacterium communetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9897.8099.98
Best-match type99.9897.8099.98

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna