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ASM73401v1

Organism name:
Thermodesulfobacterium commune DSM 2178 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 2178
BioSample:
SAMN02934663
BioProject:
PRJNA12531
Submitter:
TIGR
Date:
2014/07/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000734015.1 (latest)
RefSeq assembly accession:
GCF_000734015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera v. July-2006
Sequencing technology:
Sanger dideoxy sequencing

IDs: 200351 [UID] 1179228 [GenBank] 1515798 [RefSeq]

See Genome Information for Thermodesulfobacterium commune

There are 9 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/20/2022 06:00:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,801
CDSs (total)::1,749
Genes (coding)::1,730
CDSs (with protein)::1,730
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::19
CDSs (without protein)::19
Pseudo Genes (ambiguous residues)::0 of 19
Pseudo Genes (frameshifted)::6 of 19
Pseudo Genes (incomplete)::10 of 19
Pseudo Genes (internal stop)::4 of 19
Pseudo Genes (multiple problems)::1 of 19
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,764,045
Total ungapped length1,764,045
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000734025.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP008796.1=NZ_CP008796.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,764,045

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermodesulfobacterium commune DSM 2178Thermodesulfobacterium commune

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000746435.1Thermodesulfobacterium commune DSM 2178type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000746435.1Thermodesulfobacterium communetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9997.8099.98
Best-match type99.9997.8099.98

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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