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ASM74643v1

Organism name:
Thermodesulfobacterium commune DSM 2178 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 2178
BioSample:
SAMN02744091
BioProject:
PRJNA239504
Submitter:
DOE Joint Genome Institute
Date:
2014/08/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000746435.1 (latest)
RefSeq assembly accession:
GCF_000746435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JQLF01
Assembly method:
Unknown program v. before Fri Aug 15 11:33:28 PDT 2014
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000; Illumina MiSeq

IDs: 206761 [UID] 1194728 [GenBank] 1448668 [RefSeq]

See Genome Information for Thermodesulfobacterium commune

There are 9 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
jgi Project ID: 1024506
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
country::USA
investigation_type::bacteria_archaea
project_name::Thermodesulfobacterium commune DSM 2178
sequencing_meth::WGS
ref_biomaterial::DSM 2178
biotic_relationship::Free living
rel_to_oxygen::Anaerobe
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi0051643
Gene Calling Method::Prodigal 2.5
Isolation Site::mud from thermal spring (Ink Hot Spring, Yellowstone National Park)
Cell Shape::Rod-shaped
Motility::Nonmotile
Temperature Range::Thermophile
Temperature Optimum::70
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length1,726,993
Total ungapped length1,725,668
Gaps between scaffolds0
Number of scaffolds29
Scaffold N5094,089
Scaffold L507
Number of contigs30
Contig N5094,089
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,726,993291,725,66894,08910

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermodesulfobacterium commune DSM 2178Thermodesulfobacterium commune

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000734015.1Thermodesulfobacterium commune DSM 2178type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000734015.1Thermodesulfobacterium communetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9897.80
Best-match type99.9999.9897.80

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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