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Source database (GenBank or RefSeq) File type

ASM78486v1

Anomalous assembly.

Organism name:

Enterobacter cloacae (enterobacteria)

Taxonomy check:

Failed

Infraspecific name:

Strain: ECNIH4

BioSample:

SAMN02821150

BioProject:

PRJNA251384

Submitter:

NIH

Date:

2014/11/17

Assembly type:

Assembly level:

Complete Genome

Genome representation:

full

Assembly anomaly:

unverified source organism

Excluded from RefSeq:

unverified source organism

GenBank assembly accession:

GCA_000784865.1 (latest)

RefSeq assembly accession:

GCF_000784865.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

Assembly method:

SMRT Portal v. 2.0

Genome coverage:

not specified

Sequencing technology:

PacBio RSII

IDs: 226061 [UID] 1385988 [GenBank] 1492038 [RefSeq]

See Genome Information for Enterobacter cloacae

Pathogen Detection Resources

There are 1008 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000784865.1	=	GCF_000784865.1	ASM78486v1	Complete Genome	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::11/10/2014 11:18:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.9 (rev. 451484)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::4,742
CDS::4,514
Pseudo Genes::118
CRISPR Arrays::3
rRNAs::25 (5S, 16S, 23S)
tRNAs::84
ncRNA::1
Frameshifted Genes::41
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,946,444
Total ungapped length	4,946,444
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP009850.1	=	NZ_CP009850.1
Plasmid pENT-e56	CP009852.1	=	NZ_CP009852.1
Plasmid pENT-c88	CP009851.1	=	NZ_CP009851.1
Plasmid pKPC-860	CP009853.1	=	NZ_CP009853.1

Molecule	Total Length
All	4,946,444
Chromosome	4,761,385
Plasmid pENT-e56	77,248
Plasmid pENT-c88	51,254
Plasmid pKPC-860	56,557

	ANI	Query coverage	Subject coverage
Declared type	88.53	81.40	71.87
Best-match type	99.16	86.91	87.25

Assembly

Genome Assembly

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Contig N50

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Download Assembly

ASM78486v1

See Genome Information for Enterobacter cloacae

Pathogen Detection Resources

There are 1008 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result