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ZizJuj_1.1

Organism name:
Ziziphus jujuba (common jujube)
Infraspecific name:
Cultivar: Dongzao
BioSample:
SAMN02918186
BioProject:
PRJNA251714
Submitter:
Agricultural University of Hebei
Date:
2015/02/06
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000826755.1 (latest)
RefSeq assembly accession:
GCF_000826755.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JREP01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
yes
Genome coverage:
255.52x
Sequencing technology:
Illumina HiSeq

IDs: 250751 [UID] 1516458 [GenBank] 3132548 [RefSeq]

See Genome Information for Ziziphus jujuba

There are 7 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length437,753,511
Total ungapped length417,313,360
Gaps between scaffolds1,108
Number of scaffolds5,897
Scaffold N50301,045
Scaffold L50426
Number of contigs28,947
Contig N5033,947
Contig L503,392
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)28,947

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000826775.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM003114.1=NC_029679.10
Chromosome 2CM003115.1=NC_029680.10
Chromosome 3CM003116.1=NC_029681.10
Chromosome 4CM003117.1=NC_029682.10
Chromosome 5CM003118.1=NC_029683.10
Chromosome 6CM003119.1=NC_029684.10
Chromosome 7CM003120.1=NC_029685.10
Chromosome 8CM003121.1=NC_029686.10
Chromosome 9CM003122.1=NC_029687.10
Chromosome 10CM003123.1=NC_029688.10
Chromosome 11CM003124.1=NC_029689.10
Chromosome 12CM003125.1=NC_029690.10
unplacedn/an/an/a4,777

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All437,753,5115,897417,313,360301,04523,0501,108
Chromosome 142,390,36313440,857,604388,1951,808133
Chromosome 227,986,7439226,713,836424,1301,38891
Chromosome 326,737,29710025,615,739320,9111,17899
Chromosome 430,445,76710829,232,411390,5811,470107
Chromosome 531,365,31211329,912,027362,7481,556112
Chromosome 625,259,9128924,161,773349,4021,14588
Chromosome 727,644,22410126,212,482384,3241,572100
Chromosome 823,350,8298922,408,547361,6731,04188
Chromosome 925,348,7927724,164,519467,3401,18576
Chromosome 1020,983,2567220,084,831384,1651,01971
Chromosome 1120,703,9328119,760,207350,4371,05680
Chromosome 1219,346,0916418,585,177369,97788863
unplaced116,190,9934,777109,604,207117,6407,7440