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Caty_1.0

Organism name:
Cercocebus atys (sooty mangabey)
Isolate:
FAK
Sex:
female
BioSample:
SAMN03379531
BioProject:
PRJNA157077
Submitter:
Human Genome Sequencing Center - BCM
Date:
2015/03/19
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000955945.1 (latest)
RefSeq assembly accession:
GCF_000955945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JZLG01
Assembly method:
AllPathsLG v. 41070; Atlas Link v. 1.0; Atlas GapFill v. 2.0; PBJelly2 v. 14.9.9
Expected final version:
yes
Genome coverage:
192.0x
Sequencing technology:
Illumina; PacBio RS

IDs: 313491 [UID] 1690538 [GenBank] 1700638 [RefSeq]

See Genome Information for Cercocebus atys

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,848,246,356
Total ungapped length2,787,272,854
Gaps between scaffolds0
Number of scaffolds11,433
Scaffold N5012,849,131
Scaffold L5066
Number of contigs76,752
Contig N50112,942
Contig L506,930
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)76,752

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,848,246,35611,4332,787,272,85412,849,13165,3190