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Source database (GenBank or RefSeq) File type

L_crocea_2.0

Organism name:

Larimichthys crocea (large yellow croaker)

Isolate:

SSNF

BioSample:

SAMN03092871

BioProject:

PRJNA245366

Submitter:

BGI

Date:

2018/11/27

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000972845.2 (latest)

RefSeq assembly accession:

GCF_000972845.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 1 unlocalized scaffold on chromosome MT
Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JRPU02

Assembly method:

Platanus v. 1.2.1

Expected final version:

yes

Genome coverage:

140x

Sequencing technology:

Illumina HiSeq

IDs: 2123841 [UID] 7947638 [GenBank] 7980258 [RefSeq]

See Genome Information for Larimichthys crocea

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000972845.2	≠	GCF_000972845.2	L_crocea_2.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_000972845.1	≠	GCF_000972845.1	L_crocea_1.0	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	657,939,657
Total ungapped length	655,774,304
Gaps between scaffolds	0
Number of scaffolds	9,998
Scaffold N50	27,037,660
Scaffold L50	9
Number of contigs	16,979
Contig N50	277,487
Contig L50	605
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	9,998

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome I	CM011615.1	=	NC_040011.1	0
Chromosome II	CM011616.1	=	NC_040012.1	0
Chromosome III	CM011617.1	=	NC_040013.1	0
Chromosome IV	CM011618.1	=	NC_040014.1	0
Chromosome V	CM011619.1	=	NC_040015.1	0
Chromosome VI	CM011620.1	=	NC_040016.1	0
Chromosome VII	CM011621.1	=	NC_040017.1	0
Chromosome VIII	CM011622.1	=	NC_040018.1	0
Chromosome IX	CM011623.1	=	NC_040019.1	0
Chromosome X	CM011624.1	=	NC_040020.1	0
Chromosome XI	CM011625.1	=	NC_040021.1	0
Chromosome XII	CM011626.1	=	NC_040022.1	0
Chromosome XIII	CM011627.1	=	NC_040023.1	0
Chromosome XIV	CM011628.1	=	NC_040024.1	0
Chromosome XV	CM011629.1	=	NC_040025.1	0
Chromosome XVI	CM011630.1	=	NC_040026.1	0
Chromosome XVII	CM011631.1	=	NC_040027.1	0
Chromosome XVIII	CM011632.1	=	NC_040028.1	0
Chromosome XIX	CM011633.1	=	NC_040029.1	0
Chromosome XX	CM011634.1	=	NC_040030.1	0
Chromosome XXI	CM011635.1	=	NC_040031.1	0
Chromosome XXII	CM011636.1	=	NC_040032.1	0
Chromosome XXIII	CM011637.1	=	NC_040033.1	0
Chromosome XXIV	CM011638.1	=	NC_040034.1	0
unplaced	n/a	n/a	n/a	9,973

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	657,923,191	9,997	655,757,838	27,037,660	6,981
Chromosome I	43,682,218	1	43,539,041	43,682,218	385
Chromosome II	14,376,772	1	14,320,060	14,376,772	170
Chromosome III	52,095,323	1	52,050,918	52,095,323	242
Chromosome IV	6,444,570	1	6,442,646	6,444,570	25
Chromosome V	5,657,075	1	5,611,042	5,657,075	65
Chromosome VI	27,037,660	1	26,997,670	27,037,660	294
Chromosome VII	29,365,971	1	29,291,528	29,365,971	211
Chromosome VIII	33,955,600	1	33,871,589	33,955,600	329
Chromosome IX	13,800,884	1	13,781,270	13,800,884	63
Chromosome X	40,317,218	1	40,230,665	40,317,218	374
Chromosome XI	24,268,867	1	24,223,633	24,268,867	199
Chromosome XII	31,676,789	1	31,607,142	31,676,789	254
Chromosome XIII	48,777,100	1	48,372,721	48,777,100	1,169
Chromosome XIV	14,218,520	1	14,162,052	14,218,520	181
Chromosome XV	24,124,360	1	24,097,746	24,124,360	138
Chromosome XVI	23,718,729	1	23,660,132	23,718,729	157
Chromosome XVII	29,449,875	1	29,374,011	29,449,875	214
Chromosome XVIII	22,283,009	1	22,249,334	22,283,009	224
Chromosome XIX	13,393,637	1	13,265,290	13,393,637	157
Chromosome XX	18,787,343	1	18,757,971	18,787,343	187
Chromosome XXI	22,273,420	1	22,206,445	22,273,420	184
Chromosome XXII	23,140,888	1	23,059,075	23,140,888	189
Chromosome XXIII	21,415,293	1	21,359,590	21,415,293	179
Chromosome XXIV	19,906,365	1	19,889,023	19,906,365	148
unplaced	53,755,705	9,973	53,337,244	218,396	1,243

Assembly

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L_crocea_2.0

See Genome Information for Larimichthys crocea

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear