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Source database (GenBank or RefSeq) File type

ASM102728v1

Organism name:: Archangium gephyra (bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: DSM 2261
BioSample:: SAMN03704078
BioProject:: PRJNA283574
Submitter:: Dr. Srikrishna Subramanian, Protein Science and Engineering, Institute of Microbial Technology, Chandigarh, India
Date:: 2015/06/03
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_001027285.1 (latest)
RefSeq assembly accession:: GCF_001027285.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP Pipeline v. SMRT v2.3.0
Sequencing technology:: PacBio

IDs: 349761 [UID] 1807048 [GenBank] 1819138 [RefSeq]

See Genome Information for Archangium gephyra

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001027285.1	=	GCF_001027285.1	ASM102728v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_001027285.1-RS_2024_03_28
Annotation Date::03/28/2024 02:37:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::10,001
CDSs (total)::9,898
Genes (coding)::9,822
CDSs (with protein)::9,822
Genes (RNA)::103
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::90
ncRNAs::4
Pseudo Genes (total)::76
CDSs (without protein)::76
Pseudo Genes (ambiguous residues)::0 of 76
Pseudo Genes (frameshifted)::28 of 76
Pseudo Genes (incomplete)::45 of 76
Pseudo Genes (internal stop)::6 of 76
Pseudo Genes (multiple problems)::3 of 76
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	12,489,432
Total ungapped length	12,489,432
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.98	99.32	99.93
Best-match type	99.98	99.32	99.93

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ASM102728v1

See Genome Information for Archangium gephyra

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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