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ASM105966v1

Organism name:
Corynebacterium striatum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 962_CAUR
BioSample:
SAMN03198182
BioProject:
PRJNA267549
Submitter:
University of Washington
Date:
2015/07/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001059665.1 (latest)
RefSeq assembly accession:
GCF_001059665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JULW01
Assembly method:
ABYSS v. 1.3.5
Genome coverage:
17x
Sequencing technology:
Illumina HiSeq

IDs: 366931 [UID] 1872048 [GenBank] 2007978 [RefSeq]

See Genome Information for Corynebacterium striatum

There are 360 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from Steve Salipante, University of Washington Department of Laboratory Medicine, Box 357110, 1959 NE Pacific Street, NW120 Seattle, WA 98195-7110
The organism was changed from "Corynebacterium aurimucosum" to "Corynebacterium striatum" in July 2016.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_001059665.1
Current Name::Corynebacterium striatum
Previous Name::Corynebacterium aurimucosum
Date Updated::2016-07-12
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_000159135.1
A1 Name::Corynebacterium striatum
A1 ANI::98.67453%
A1 Query Coverage::88%
A1 Subject Coverage::92%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_000174695.1
A2 Name::Corynebacterium aurimucosum
A2 ANI::84.47984%
A2 Query Coverage::15%
A2 Subject Coverage::15%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length2,834,694
Total ungapped length2,834,494
Gaps between scaffolds0
Number of scaffolds141
Scaffold N5083,637
Scaffold L5012
Number of contigs143
Contig N5083,637
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)141

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,834,6941412,834,49483,63720

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium striatumCorynebacterium striatum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006538485.1Corynebacterium striatumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006538485.1Corynebacterium striatumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6689.1981.18
Best-match type98.6689.1981.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna