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ASM130889v1

  • Anomalous assembly.
Organism name:
Leptospirillum sp. YQP-1 (bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: YQP-1
BioSample:
SAMN03945279
BioProject:
PRJNA291527
Submitter:
Heilongjiang Bayi Agricultural University
Date:
2015/10/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_001308895.1 (latest)
RefSeq assembly accession:
GCF_001308895.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LIEB01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
yes
Genome coverage:
232.0x
Sequencing technology:
Illumina MiSeq

IDs: 499761 [UID] 2385528 [GenBank] 2391158 [RefSeq]

History (Show revision history)

Comment

Global statistics

Total sequence length3,103,789
Total ungapped length3,102,370
Gaps between scaffolds0
Number of scaffolds85
Scaffold N50101,596
Scaffold L5010
Number of contigs104
Contig N5086,194
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)85

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,103,789853,102,370101,596190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leptospirillum sp. YQP-1Leptospirillum sp. YQP-1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000021485.1Acidithiobacillus ferrooxidanssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.8383.6286.99

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is suspected of being inaccurate