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Source database (GenBank or RefSeq) File type

Aiptasia genome 1.1

Organism name:: Exaiptasia diaphana (sea anemones)
Isolate:: CC7
BioSample:: SAMN03839803
BioProject:: PRJNA261862
Submitter:: KAUST
Date:: 2015/10/28
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_001417965.1 (latest)
RefSeq assembly accession:: GCF_001417965.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: LJWW01
Assembly method:: AllPaths v. r44837
Expected final version:: no
Genome coverage:: 60.0x
Sequencing technology:: Illumina HiSeq; Illumina MiSeq

IDs: 562261 [UID] 2535758 [GenBank] 4457158 [RefSeq]

See Genome Information for Exaiptasia diaphana

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Annotation was added to the contigs in Feburary 2016.

Global statistics

Total sequence length	256,132,296
Total ungapped length	210,831,060
Gaps between scaffolds	0
Number of scaffolds	4,312
Scaffold N50	442,145
Scaffold L50	171
Number of contigs	29,750
Contig N50	14,401
Contig L50	3,853
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	4,312

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Assembly Information

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Nucleotide INSDC
Nucleotide INSDC (GenBank)
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Nucleotide RefSeq
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Taxonomy
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PubMed articles for this assembly

The genome of Aiptasia, a sea anemone model for coral symbiosis.
The genome of Aiptasia, a sea anemone model for coral symbiosis.
Baumgarten S, Simakov O, Esherick LY, Liew YJ, Lehnert EM...

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Assembly Definition
Assembly Statistics

Global assembly definition

Download the full sequence report

The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

Primary Assembly

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
unplaced	256,132,296	4,312	210,831,060	442,145	25,438	0