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ASM143184v1

Organism name:
Calidris pugnax (ruff)
Isolate:
Ruff
BioSample:
SAMN03491621
BioProject:
PRJNA281024
Submitter:
BGI
Date:
2015/11/04
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001431845.1 (latest)
RefSeq assembly accession:
GCF_001431845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LDEH01
Assembly method:
SOAPdenovo v. 2.04
Genome coverage:
113x
Sequencing technology:
Illumina Hiseq2000

IDs: 577391 [UID] 2574088 [GenBank] 2715628 [RefSeq]

See Genome Information for Calidris pugnax

Pathogen Detection Resources

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,229,094,286
Total ungapped length1,182,953,763
Gaps between scaffolds0
Number of scaffolds3,753
Scaffold N5010,060,041
Scaffold L5033
Number of contigs34,157
Contig N50109,237
Contig L503,054
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34,157

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,229,094,2863,7531,182,953,76310,060,04130,4040