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Source database (GenBank or RefSeq) File type

CcrdV1

This assembly has been replaced. See current version

Anomalous assembly.

Organism name:

Cynara cardunculus var. scolymus (eudicots)

Isolate:

BioSample:

SAMN03402638

BioProject:

PRJNA238069

Submitter:

Compositae Genome Project

Date:

2018/04/17

Assembly level:

Chromosome

Genome representation:

full

Assembly anomaly:

contaminated

Excluded from RefSeq:

contaminated

GenBank assembly accession:

GCA_001531365.1 (replaced)

RefSeq assembly accession:

GCF_001531365.1 (replaced)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

LEKV01

Assembly method:

AllPaths v. 41684

Genome coverage:

80.0x

Sequencing technology:

Illumina HiSeq

IDs: 1678791 [UID] 6376458 [GenBank] 6431618 [RefSeq]

See Genome Information for Cynara cardunculus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001531365.2	=	GCF_001531365.2	CcrdV1.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_001531365.1	=	GCF_001531365.1	CcrdV1	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

In July 2022 109 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	725,197,765
Total ungapped length	654,659,879
Gaps between scaffolds	5,305
Number of scaffolds	13,588
Scaffold N50	125,941
Scaffold L50	1,408
Number of contigs	73,428
Contig N50	19,399
Contig L50	9,583
Total number of chromosomes and plasmids	17
Number of component sequences (WGS or clone)	13,588

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome LG 1	CM009732.1	=	NC_037528.1	0
Chromosome LG 2	CM009733.1	=	NC_037529.1	0
Chromosome LG 3	CM009734.1	=	NC_037530.1	0
Chromosome LG 4	CM009735.1	=	NC_037531.1	0
Chromosome LG 5	CM009736.1	=	NC_037532.1	0
Chromosome LG 6	CM009737.1	=	NC_037533.1	0
Chromosome LG 7	CM009738.1	=	NC_037534.1	0
Chromosome LG 8	CM009739.1	=	NC_037535.1	0
Chromosome LG 9	CM009740.1	=	NC_037536.1	0
Chromosome LG 10	CM009741.1	=	NC_037537.1	0
Chromosome LG 11	CM009742.1	=	NC_037538.1	0
Chromosome LG 12	CM009743.1	=	NC_037539.1	0
Chromosome LG 13	CM009744.1	=	NC_037540.1	0
Chromosome LG 14	CM009745.1	=	NC_037541.1	0
Chromosome LG 15	CM009746.1	=	NC_037542.1	0
Chromosome LG 16	CM009747.1	=	NC_037543.1	0
Chromosome LG 17	CM009748.1	=	NC_037544.1	0
unplaced	n/a	n/a	n/a	8,266

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	725,197,765	13,588	654,659,879	125,941	59,840	5,305
Chromosome LG 1	49,754,839	475	45,512,464	189,938	3,605	474
Chromosome LG 2	70,441,430	1,025	63,486,964	118,491	5,821	1,024
Chromosome LG 3	40,297,365	361	37,054,344	185,188	2,784	360
Chromosome LG 4	20,164,318	168	18,659,451	234,908	1,385	167
Chromosome LG 5	37,196,517	337	34,054,720	193,719	2,755	336
Chromosome LG 6	20,634,051	231	18,598,401	139,197	1,778	230
Chromosome LG 7	15,568,887	91	14,481,568	297,880	995	90
Chromosome LG 8	25,947,084	230	23,925,941	174,428	1,792	229
Chromosome LG 9	18,344,014	172	16,755,018	196,942	1,354	171
Chromosome LG 10	29,133,143	289	26,713,823	187,064	2,101	288
Chromosome LG 11	22,016,825	112	20,629,322	303,145	1,307	111
Chromosome LG 12	39,693,055	462	35,957,965	137,470	3,138	461
Chromosome LG 13	41,551,399	455	37,987,945	152,640	3,138	454
Chromosome LG 14	14,487,748	128	13,406,107	188,349	987	127
Chromosome LG 15	21,275,025	123	19,710,538	331,745	1,341	122
Chromosome LG 16	21,933,510	189	20,120,680	197,579	1,602	188
Chromosome LG 17	37,737,787	474	34,112,410	135,040	3,043	473
unplaced	199,020,768	8,266	173,492,218	57,851	20,914	0

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CcrdV1

See Genome Information for Cynara cardunculus

Pathogen Detection Resources

History (Show revision history)

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