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ASM154827v1

Organism name:
Caldimicrobium thiodismutans (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TF1
BioSample:
SAMD00039083
BioProject:
PRJDB4154
Submitter:
Microbial Ecology Group, Institution of Low Temperature Science, Hokkaido University
Date:
2016/01/07
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001548275.1 (latest)
RefSeq assembly accession:
GCF_001548275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Velvet v. 1.2.08
Genome coverage:
Unknown
Sequencing technology:
Illumina Hiseq

IDs: 635611 [UID] 2859738 [GenBank] 3405788 [RefSeq]

See Genome Information for Caldimicrobium thiodismutans

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 00:41:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,820
CDSs (total)::1,768
Genes (coding)::1,762
CDSs (with protein)::1,762
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::6
CDSs (without protein)::6
Pseudo Genes (ambiguous residues)::0 of 6
Pseudo Genes (frameshifted)::0 of 6
Pseudo Genes (incomplete)::3 of 6
Pseudo Genes (internal stop)::3 of 6
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,814,952
Total ungapped length1,814,952
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001548285.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP014945.1=NZ_AP014945.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,814,952

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Caldimicrobium thiodismutansCaldimicrobium thiodismutans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000215975.1Thermodesulfobacterium geofontistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.520.490.54

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected