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ASM160598v1

Organism name:
Dendrobium catenatum (monocots)
Sex:
hermaphrodite
BioSample:
SAMN03083363
BioProject:
PRJNA262478
Submitter:
The National Orchid Conservation Center of China, and The Orchid Conservation and Research Center of Shenzhen
Date:
2016/02/26
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001605985.1 (replaced)
RefSeq assembly accession:
GCF_001605985.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd
  • Data displayed for RefSeq version
WGS Project:
JSDN01
Assembly method:
platanus v. 1.2.1
Expected final version:
yes
Genome coverage:
202.0x
Sequencing technology:
Illumina HiSeq

IDs: 713801 [UID] 3155168 [GenBank] 4345408 [RefSeq]

See Genome Information for Dendrobium catenatum

History (Show revision history)

Comment

Global statistics

Total sequence length1,008,684,112
Total ungapped length955,550,101
Gaps between scaffolds0
Number of scaffolds72,902
Scaffold N50391,462
Scaffold L50723
Number of contigs106,216
Contig N5033,094
Contig L508,480
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)106,216

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,008,531,89172,901955,397,880391,46233,3140
MoleculeTotal
Length
Chloroplast Pltd152,221