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ASM164234v2

Organism name:
Rhincodon typus (whale shark)
Isolate:
Ralph
Sex:
male
BioSample:
SAMN04562461
Submitter:
Emory University
Date:
2017/03/03
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_001642345.2 (replaced)
RefSeq assembly accession:
GCF_001642345.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
LVEK02
Assembly method:
Canu v. AUG-2016; Pilon v. 1.18
Expected final version:
yes
Genome coverage:
20.0x
Sequencing technology:
PacBio

IDs: 1017331 [UID] 4170658 [GenBank] 4187498 [RefSeq]

See Genome Information for Rhincodon typus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,931,582,701
Total ungapped length2,931,582,287
Gaps between scaffolds0
Number of scaffolds57,333
Scaffold N50144,422
Scaffold L505,485
Number of contigs57,343
Contig N50144,422
Contig L505,485
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57,333

Supplemental Content

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,931,582,70157,3332,931,582,287144,422100