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ASM168556v1

Organism name:
Bacillus thuringiensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: MYBT18246
BioSample:
SAMN03890259
BioProject:
PRJNA290307
Submitter:
Goettingen Genomics Laboratory
Date:
2016/07/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001685565.1 (latest)
RefSeq assembly accession:
GCF_001685565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2; Newbler v. 2.8
Genome coverage:
67
Sequencing technology:
Sanger dideoxy sequencing; 454; PacBio

IDs: 769731 [UID] 3344328 [GenBank] 3350008 [RefSeq]

See Genome Information for Bacillus thuringiensis

Pathogen Detection Resources

There are 1337 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/21/2024 03:08:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,136
CDSs (total)::6,984
Genes (coding)::6,460
CDSs (with protein)::6,460
Genes (RNA)::152
rRNAs::12, 12, 12 (5S, 16S, 23S)
complete rRNAs::12, 12, 12 (5S, 16S, 23S)
tRNAs::111
ncRNAs::5
Pseudo Genes (total)::524
CDSs (without protein)::524
Pseudo Genes (ambiguous residues)::0 of 524
Pseudo Genes (frameshifted)::240 of 524
Pseudo Genes (incomplete)::284 of 524
Pseudo Genes (internal stop)::90 of 524
Pseudo Genes (multiple problems)::77 of 524
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,752,488
Total ungapped length6,752,488
Total number of chromosomes and plasmids12

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001685595.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP015350.1=NZ_CP015350.1
Plasmid p6330CP015361.1=NZ_CP015361.1
Plasmid p14456CP015360.1=NZ_CP015360.1
Plasmid p17175CP015359.1=NZ_CP015359.1
Plasmid p46701CP015358.1=NZ_CP015358.1
Plasmid p55166CP015357.1=NZ_CP015357.1
Plasmid p101287CP015356.1=NZ_CP015356.1
Plasmid p109822CP015355.1=NZ_CP015355.1
Plasmid p120416CP015354.1=NZ_CP015354.1
Plasmid p120510CP015353.1=NZ_CP015353.1
Plasmid p142098CP015352.1=NZ_CP015352.1
Plasmid p150790CP015351.1=NZ_CP015351.1

Assembly statistics

MoleculeTotal
Length
All6,752,488
Chromosome 5,867,736
Plasmid p63306,330
Plasmid p1445614,456
Plasmid p1717517,175
Plasmid p4670146,701
Plasmid p5516655,166
Plasmid p101287101,287
Plasmid p109822109,822
Plasmid p120416120,416
Plasmid p120510120,510
Plasmid p142098142,098
Plasmid p150790150,791

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus thuringiensisBacillus thuringiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002243685.1Bacillus thuringiensissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002243685.1Bacillus thuringiensissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7074.4578.00
Best-match type98.7074.4578.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna