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ASM172094v1

Organism name:
Enterococcus faecium (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ISMMS_VRE_1
BioSample:
SAMN03988632
BioProject:
PRJNA292786
Submitter:
Mount Sinai School of Medicine
Date:
2016/09/07
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001720945.1 (latest)
RefSeq assembly accession:
GCF_001720945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2014
Genome coverage:
218
Sequencing technology:
PacBio

IDs: 791491 [UID] 3436048 [GenBank] 3437948 [RefSeq]

See Genome Information for Enterococcus faecium

Pathogen Detection Resources

There are 23391 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria available from Shirish Huprikar (shirish. huprikar@mssm.edu), Mount Sinai School of Medicine, One Gustave Levy Place, New York, NY 10029.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/13/2023 01:30:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,247
CDSs (total)::3,153
Genes (coding)::3,000
CDSs (with protein)::3,000
Genes (RNA)::94
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::72
ncRNAs::4
Pseudo Genes (total)::153
CDSs (without protein)::153
Pseudo Genes (ambiguous residues)::0 of 153
Pseudo Genes (frameshifted)::73 of 153
Pseudo Genes (incomplete)::75 of 153
Pseudo Genes (internal stop)::30 of 153
Pseudo Genes (multiple problems)::22 of 153
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,259,287
Total ungapped length3,259,287
Total number of chromosomes and plasmids6

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001720955.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP012430.1=NZ_CP012430.1
Plasmid ISMMS_VRE_p1CP012432.1=NZ_CP012432.1
Plasmid ISMMS_VRE_p2CP012431.1=NZ_CP012431.1
Plasmid ISMMS_VRE_p3CP012435.1=NZ_CP012435.1
Plasmid ISMMS_VRE_p4CP012434.1=NZ_CP012434.1
Plasmid ISMMS_VRE_p5CP012433.1=NZ_CP012433.1

Assembly statistics

MoleculeTotal
Length
All3,259,287
Chromosome 3,130,373
Plasmid ISMMS_VRE_p157,543
Plasmid ISMMS_VRE_p244,226
Plasmid ISMMS_VRE_p313,136
Plasmid ISMMS_VRE_p413,123
Plasmid ISMMS_VRE_p5886

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faeciumEnterococcus faecium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_029023785.1Enterococcus faeciumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_029023785.1Enterococcus faeciumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5175.2391.76
Best-match type99.5175.2391.76

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna