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P_rapae_3842_assembly_v2

Organism name:
Pieris rapae (cabbage white)
Sex:
male
BioSample:
SAMN04866668
BioProject:
PRJNA318727
Submitter:
The University of Texas Southwestern Medical Center
Date:
2016/10/16
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_001856805.1 (latest)
RefSeq assembly accession:
GCF_001856805.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
LWME01
Assembly method:
Platanus v. 1.2.4
Expected final version:
yes
Genome coverage:
102.9x
Sequencing technology:
Illumina HiSeq

IDs: 870371 [UID] 3671408 [GenBank] 4909248 [RefSeq]

See Genome Information for Pieris rapae

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length245,871,251
Total ungapped length242,721,646
Gaps between scaffolds0
Number of scaffolds7,348
Scaffold N50617,301
Scaffold L50118
Number of contigs14,195
Contig N5054,957
Contig L501,300
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)7,348

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced245,871,2517,348242,721,646617,3016,8470