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ASM185804v2

Organism name:
Oreochromis niloticus (Nile tilapia)
Isolate:
F11D_XX
Sex:
female
BioSample:
SAMN05859795
BioProject:
PRJNA344471
Submitter:
University of Maryland
Date:
2016/11/21
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_001858045.2 (replaced)
RefSeq assembly accession:
GCF_001858045.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
MKQE01
Assembly method:
Canu v. 1.0; Chromonomer v. 1.05
Expected final version:
yes
Genome coverage:
44.0x
Sequencing technology:
PacBio

IDs: 893611 [UID] 3739788 [GenBank] 3742568 [RefSeq]

See Genome Information for Oreochromis niloticus

There are 6 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,009,856,516
Total ungapped length1,005,626,516
Gaps between scaffolds0
Number of scaffolds2,567
Scaffold N5037,007,722
Scaffold L5012
Number of contigs2,990
Contig N503,090,215
Contig L5093
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)2,567

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_001858055.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM007481.1=NC_031965.10
Linkage Group LG2CM007482.1=NC_031966.10
Linkage Group LG3aCM007483.1=NC_031967.10
Linkage Group LG3bCM007484.1=NC_031968.10
Linkage Group LG4CM007485.1=NC_031969.10
Linkage Group LG5CM007486.1=NC_031970.10
Linkage Group LG6CM007487.1=NC_031971.10
Linkage Group LG7CM007488.1=NC_031972.10
Linkage Group LG8CM007489.1=NC_031973.10
Linkage Group LG9CM007490.1=NC_031974.10
Linkage Group LG10CM007491.1=NC_031975.10
Linkage Group LG11CM007492.1=NC_031976.10
Linkage Group LG12CM007493.1=NC_031977.10
Linkage Group LG13CM007494.1=NC_031978.10
Linkage Group LG14CM007495.1=NC_031979.10
Linkage Group LG15CM007496.1=NC_031980.10
Linkage Group LG16CM007497.1=NC_031987.10
Linkage Group LG17CM007498.1=NC_031981.10
Linkage Group LG18CM007499.1=NC_031982.10
Linkage Group LG19CM007500.1=NC_031983.10
Linkage Group LG20CM007501.1=NC_031984.10
Linkage Group LG22CM007502.1=NC_031985.10
Linkage Group LG23CM007503.1=NC_031986.10
unplacedn/an/an/a2,543

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,009,839,8892,5661,005,609,88937,007,7224230
Linkage Group LG138,372,991138,192,99138,372,991180
Linkage Group LG235,256,741135,096,74135,256,741160
Linkage Group LG3a14,041,792113,901,79214,041,792140
Linkage Group LG3b54,508,961153,938,96154,508,961570
Linkage Group LG438,038,224137,838,22438,038,224200
Linkage Group LG534,628,617134,538,61734,628,61790
Linkage Group LG644,571,662144,281,66244,571,662290
Linkage Group LG762,059,223161,839,22362,059,223220
Linkage Group LG830,802,437130,672,43730,802,437130
Linkage Group LG927,519,051127,459,05127,519,05160
Linkage Group LG1032,426,571132,306,57132,426,571120
Linkage Group LG1136,466,354136,276,35436,466,354190
Linkage Group LG1241,232,431141,062,43141,232,431170
Linkage Group LG1332,337,344132,207,34432,337,344130
Linkage Group LG1439,264,731139,004,73139,264,731260
Linkage Group LG1536,154,882135,994,88236,154,882160
Linkage Group LG1643,860,769143,700,76943,860,769160
Linkage Group LG1740,919,683140,759,68340,919,683160
Linkage Group LG1837,007,722136,807,72237,007,722200
Linkage Group LG1931,245,232131,105,23231,245,232140
Linkage Group LG2036,767,035136,617,03536,767,035150
Linkage Group LG2237,011,614136,841,61437,011,614170
Linkage Group LG2344,097,196143,917,19644,097,196180
unplaced141,248,6262,543141,248,626198,37300
MoleculeTotal
Length
Mitochondrion MT16,627