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ASM189590v1

Organism name:
Enterococcus faecium (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: VRE001
BioSample:
SAMN06018903
BioProject:
PRJNA353653
Submitter:
St Jude Children's Research Hospital
Date:
2016/12/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001895905.1 (latest)
RefSeq assembly accession:
GCF_001895905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CLC NGS Cell v. October 2014
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio

IDs: 910021 [UID] 3777668 [GenBank] 3841068 [RefSeq]

See Genome Information for Enterococcus faecium

There are 23374 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Jason Rosch.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 15:06:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,217
CDSs (total)::3,123
Genes (coding)::2,967
CDSs (with protein)::2,967
Genes (RNA)::94
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::72
ncRNAs::4
Pseudo Genes (total)::156
CDSs (without protein)::156
Pseudo Genes (ambiguous residues)::0 of 156
Pseudo Genes (frameshifted)::77 of 156
Pseudo Genes (incomplete)::86 of 156
Pseudo Genes (internal stop)::26 of 156
Pseudo Genes (multiple problems)::27 of 156
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,242,672
Total ungapped length3,242,672
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001895915.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP018071.1=NZ_CP018071.1
Plasmid unnamed1CP018070.1=NZ_CP018070.1
Plasmid unnamed2CP018072.1=NZ_CP018072.1
Plasmid unnamed3CP018073.1=NZ_CP018073.1

Assembly statistics

MoleculeTotal
Length
All3,242,672
Chromosome 2,933,966
Plasmid unnamed178,626
Plasmid unnamed259,226
Plasmid unnamed3170,854

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faeciumEnterococcus faecium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001544255.1Enterococcus faecium NBRC 100486type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001544255.1Enterococcus faeciumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5270.5692.08
Best-match type99.5270.5692.08

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna