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Source database (GenBank or RefSeq) File type

ASM200762v1

Organism name:: Enterococcus faecium (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: 2014-VREF-41
BioSample:: SAMN06186500
BioProject:: PRJNA358851
Submitter:: Asia Pacific Foundation for Infectious Diseases (APFID)
Date:: 2017/02/28
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_002007625.1 (latest)
RefSeq assembly accession:: GCF_002007625.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: GS De Novo Assembler v. OCT-2016
Expected final version:: no
Genome coverage:: 346.4x
Sequencing technology:: PacBio

IDs: 1013381 [UID] 4161888 [GenBank] 4163428 [RefSeq]

See Genome Information for Enterococcus faecium

Pathogen Detection Resources

There are 23391 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002007625.1	=	GCF_002007625.1	ASM200762v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Chung, Doo Ryeon. Annotated using prokka 1.11 from http://www.vicbioinformatics.com

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::01/14/2024 07:57:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,259
CDSs (total)::3,169
Genes (coding)::3,035
CDSs (with protein)::3,035
Genes (RNA)::90
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::4
Pseudo Genes (total)::134
CDSs (without protein)::134
Pseudo Genes (ambiguous residues)::0 of 134
Pseudo Genes (frameshifted)::47 of 134
Pseudo Genes (incomplete)::75 of 134
Pseudo Genes (internal stop)::33 of 134
Pseudo Genes (multiple problems)::17 of 134
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,280,732
Total ungapped length	3,280,732
Total number of chromosomes and plasmids	5

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP019208.1	=	NZ_CP019208.1
Plasmid p41-1	CP019209.1	=	NZ_CP019209.1
Plasmid p41-2	CP019210.1	=	NZ_CP019210.1
Plasmid p41-3	CP019211.1	=	NZ_CP019211.1
Plasmid p41-4	CP019212.1	=	NZ_CP019212.1

Molecule	Total Length
All	3,280,732
Chromosome	3,009,007
Plasmid p41-1	215,998
Plasmid p41-2	45,501
Plasmid p41-3	5,850
Plasmid p41-4	4,376

	ANI	Query coverage	Subject coverage
Declared type	99.56	73.00	89.62
Best-match type	99.56	73.00	89.62

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ASM200762v1

See Genome Information for Enterococcus faecium

Pathogen Detection Resources

There are 23391 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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