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ASM200933v2

Organism name:
Desulfococcus multivorans (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 2059
BioSample:
SAMN06392868
BioProject:
PRJNA376441
Submitter:
California Institute of Technology
Date:
2017/03/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002009335.2 (latest)
RefSeq assembly accession:
GCF_002009335.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
400.0x
Sequencing technology:
PacBio

IDs: 1022741 [UID] 4192528 [GenBank] 4195918 [RefSeq]

See Genome Information for Desulfococcus multivorans

There are 5 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_002009335.2-RS_2024_03_22
Annotation Date::03/22/2024 16:52:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,885
CDSs (total)::3,818
Genes (coding)::3,799
CDSs (with protein)::3,799
Genes (RNA)::67
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::54
ncRNAs::4
Pseudo Genes (total)::19
CDSs (without protein)::19
Pseudo Genes (ambiguous residues)::0 of 19
Pseudo Genes (frameshifted)::7 of 19
Pseudo Genes (incomplete)::12 of 19
Pseudo Genes (internal stop)::2 of 19
Pseudo Genes (multiple problems)::2 of 19
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,455,976
Total ungapped length4,455,976
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002009345.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP019913.2=NZ_CP019913.2

Assembly statistics

MoleculeTotal
Length
Chromosome 4,455,976

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfococcus multivoransDesulfococcus multivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001854245.1Desulfococcus multivoranstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001854245.1Desulfococcus multivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9899.99
Best-match type99.9999.9899.99

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna