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ASM202504v1

Organism name:
Enterococcus faecium (firmicutes)
Taxonomy check:
OK
Isolate:
2014-VREF-268
BioSample:
SAMN06472830
BioProject:
PRJNA358851
Submitter:
Asia Pacific Foundation for Infectious Diseases (APFID)
Date:
2017/03/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002025045.1 (latest)
RefSeq assembly accession:
GCF_002025045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
GS De Novo Assembler v. DEC-2016
Expected final version:
yes
Genome coverage:
245.8x
Sequencing technology:
PacBio

IDs: 1023051 [UID] 4196378 [GenBank] 4199188 [RefSeq]

See Genome Information for Enterococcus faecium

There are 23374 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Chung, Doo Ryeon.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/14/2024 08:09:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,395
CDSs (total)::3,303
Genes (coding)::3,160
CDSs (with protein)::3,160
Genes (RNA)::92
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::70
ncRNAs::4
Pseudo Genes (total)::143
CDSs (without protein)::143
Pseudo Genes (ambiguous residues)::0 of 143
Pseudo Genes (frameshifted)::49 of 143
Pseudo Genes (incomplete)::84 of 143
Pseudo Genes (internal stop)::30 of 143
Pseudo Genes (multiple problems)::17 of 143
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,392,168
Total ungapped length3,392,168
Total number of chromosomes and plasmids4

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002025055.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP019992.1=NZ_CP019992.1
Plasmid p268-1CP019993.1=NZ_CP019993.1
Plasmid p268-2CP019994.1=NZ_CP019994.1
Plasmid p268-3CP019995.1=NZ_CP019995.1

Assembly statistics

MoleculeTotal
Length
All3,392,168
Chromosome 2,990,310
Plasmid p268-1243,818
Plasmid p268-299,829
Plasmid p268-358,211

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faeciumEnterococcus faecium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_029023785.1Enterococcus faeciumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_029023785.1Enterococcus faeciumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5571.3990.62
Best-match type99.5571.3990.62

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna