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ASM202506v1

Organism name:
Enterococcus faecium (firmicutes)
Taxonomy check:
OK
Isolate:
2014-VREF-63
BioSample:
SAMN06472829
BioProject:
PRJNA358851
Submitter:
Asia Pacific Foundation for Infectious Diseases (APFID)
Date:
2017/03/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002025065.1 (latest)
RefSeq assembly accession:
GCF_002025065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
GS De Novo Assembler v. JAN-2017
Expected final version:
yes
Genome coverage:
309.04x
Sequencing technology:
PacBio

IDs: 1023061 [UID] 4196398 [GenBank] 4199648 [RefSeq]

See Genome Information for Enterococcus faecium

There are 23391 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Chung, Doo Ryeon.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/14/2024 08:12:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,223
CDSs (total)::3,132
Genes (coding)::3,005
CDSs (with protein)::3,005
Genes (RNA)::91
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::4
Pseudo Genes (total)::127
CDSs (without protein)::127
Pseudo Genes (ambiguous residues)::0 of 127
Pseudo Genes (frameshifted)::47 of 127
Pseudo Genes (incomplete)::75 of 127
Pseudo Genes (internal stop)::28 of 127
Pseudo Genes (multiple problems)::19 of 127
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,238,466
Total ungapped length3,238,466
Total number of chromosomes and plasmids4

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002025075.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP019988.1=NZ_CP019988.1
Plasmid p63-1CP019989.1=NZ_CP019989.1
Plasmid p63-2CP019990.1=NZ_CP019990.1
Plasmid p63-3CP019991.1=NZ_CP019991.1

Assembly statistics

MoleculeTotal
Length
All3,238,466
Chromosome 2,907,074
Plasmid p63-1287,502
Plasmid p63-225,791
Plasmid p63-318,099

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faeciumEnterococcus faecium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_029023785.1Enterococcus faeciumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_029023785.1Enterococcus faeciumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5573.6389.23
Best-match type99.5573.6389.23

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna