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Source database (GenBank or RefSeq) File type

ASM207683v1

Organism name:: Streptococcus pneumoniae (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: Hu17
BioSample:: SAMN06622699
BioProject:: PRJNA379899
Submitter:: Regine Hakenbeck
Date:: 2017/04/03
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_002076835.1 (latest)
RefSeq assembly accession:: GCF_002076835.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Newbler v. 2.6
Genome coverage:: 157x
Sequencing technology:: Illumina HiSeq

IDs: 1060821 [UID] 4335528 [GenBank] 25918088 [RefSeq]

See Genome Information for Streptococcus pneumoniae

Pathogen Detection Resources

There are 46012 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002076835.1	=	GCF_002076835.1	ASM207683v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/05/2024 01:42:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,181
CDSs (total)::2,152
Genes (coding)::2,010
CDSs (with protein)::2,010
Genes (RNA)::29
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::23
ncRNAs::3
Pseudo Genes (total)::142
CDSs (without protein)::142
Pseudo Genes (ambiguous residues)::0 of 142
Pseudo Genes (frameshifted)::66 of 142
Pseudo Genes (incomplete)::78 of 142
Pseudo Genes (internal stop)::35 of 142
Pseudo Genes (multiple problems)::32 of 142
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,154,362
Total ungapped length	2,117,267
Gaps between scaffolds	0
Number of scaffolds	2
Scaffold N50	2,148,350
Scaffold L50	1
Number of contigs	120
Contig N50	32,708
Contig L50	19
Total number of chromosomes and plasmids	2
Number of component sequences (WGS or clone)	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP020549.1	=	NZ_CP020549.1
Plasmid pSpn_Hu17	CP020550.1	=	NZ_CP020550.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,154,362	2	2,117,267	2,148,350	118
Chromosome	2,148,350	1	2,112,155	2,148,350	114
Plasmid pSpn_Hu17	6,012	1	5,112	6,012	4

	ANI	Query coverage	Subject coverage
Declared type	98.50	87.70	87.96
Best-match type	98.50	87.70	87.96

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ASM207683v1

See Genome Information for Streptococcus pneumoniae

Pathogen Detection Resources

There are 46012 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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