Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM211411v1

Description:

Golden Delicious Doubled haploid version 1

Organism name:

Malus domestica (apple)

Infraspecific name:

Cultivar: Golden Delicious

Isolate:

X9273 #13

BioSample:

SAMN05603590

BioProject:

PRJNA339703

Submitter:

IRHS

Date:

2017/05/03

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_002114115.1 (latest)

RefSeq assembly accession:

GCF_002114115.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

MJAX01

Assembly method:

DBG2OLC v. May-2016; SOAPdenovo2 v. May-2016; BESST v. May-2016; BioNano hybrid assembly v. May-2016

Expected final version:

yes

Genome coverage:

700.0x

Sequencing technology:

Illumina; PacBio; BioNano

IDs: 1086361 [UID] 4434058 [GenBank] 9460718 [RefSeq]

See Genome Information for Malus domestica

Pathogen Detection Resources

There are 31 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002114115.1	≠	GCF_002114115.1	ASM211411v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	703,358,299
Total ungapped length	625,672,265
Gaps between scaffolds	0
Number of scaffolds	807
Scaffold N50	37,631,755
Scaffold L50	9
Number of contigs	7,497
Contig N50	588,895
Contig L50	329
Total number of chromosomes and plasmids	18
Number of component sequences (WGS or clone)	807

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM007867.1	=	NC_041789.1	0
Chromosome 2	CM007868.1	=	NC_041790.1	0
Chromosome 3	CM007869.1	=	NC_041791.1	0
Chromosome 4	CM007870.1	=	NC_041792.1	0
Chromosome 5	CM007871.1	=	NC_041793.1	0
Chromosome 6	CM007872.1	=	NC_041794.1	0
Chromosome 7	CM007873.1	=	NC_041795.1	0
Chromosome 8	CM007874.1	=	NC_041796.1	0
Chromosome 9	CM007875.1	=	NC_041797.1	0
Chromosome 10	CM007876.1	=	NC_041798.1	0
Chromosome 11	CM007877.1	=	NC_041799.1	0
Chromosome 12	CM007878.1	=	NC_041800.1	0
Chromosome 13	CM007879.1	=	NC_041801.1	0
Chromosome 14	CM007880.1	=	NC_041802.1	0
Chromosome 15	CM007881.1	=	NC_041803.1	0
Chromosome 16	CM007882.1	=	NC_041804.1	0
Chromosome 17	CM007883.1	=	NC_041805.1	0
unplaced	n/a	n/a	n/a	789

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	702,961,352	806	625,275,318	37,631,755	6,690
Chromosome 1	32,709,648	1	27,129,463	32,709,648	489
Chromosome 2	37,631,755	1	34,344,118	37,631,755	285
Chromosome 3	37,690,471	1	33,346,486	37,690,471	341
Chromosome 4	32,357,154	1	28,086,259	32,357,154	384
Chromosome 5	48,068,851	1	41,475,529	48,068,851	562
Chromosome 6	37,231,166	1	30,558,206	37,231,166	610
Chromosome 7	36,738,692	1	33,681,735	36,738,692	265
Chromosome 8	31,666,303	1	29,076,575	31,666,303	224
Chromosome 9	37,676,754	1	32,841,772	37,676,754	400
Chromosome 10	41,841,605	1	39,185,791	41,841,605	248
Chromosome 11	42,925,075	1	36,934,085	42,925,075	478
Chromosome 12	33,134,071	1	29,849,502	33,134,071	256
Chromosome 13	44,437,459	1	38,220,009	44,437,459	597
Chromosome 14	32,560,231	1	28,224,458	32,560,231	320
Chromosome 15	55,080,361	1	50,299,186	55,080,361	417
Chromosome 16	41,441,581	1	36,074,939	41,441,581	479
Chromosome 17	34,817,048	1	31,057,267	34,817,048	306
unplaced	44,953,127	789	44,889,938	76,411	29

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

ASM211411v1

See Genome Information for Malus domestica

Pathogen Detection Resources

There are 31 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear