Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM227793v1

Organism name:: Enterococcus durans (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: BDGP3
BioSample:: SAMN07510606
BioProject:: PRJNA397225
Submitter:: Lawrence Berkeley National Laboratory
Date:: 2017/08/30
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_002277935.1 (latest)
RefSeq assembly accession:: GCF_002277935.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Celera Assembler v. 2015-09-11
Expected final version:: yes
Genome coverage:: 150.0x
Sequencing technology:: PacBio

IDs: 1185361 [UID] 4972658 [GenBank] 4986168 [RefSeq]

See Genome Information for Enterococcus durans

Pathogen Detection Resources

There are 171 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002277935.1	=	GCF_002277935.1	ASM227793v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Annotation modified by submitter

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/17/2024 06:50:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,841
CDSs (total)::2,750
Genes (coding)::2,670
CDSs (with protein)::2,670
Genes (RNA)::91
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::4
Pseudo Genes (total)::80
CDSs (without protein)::80
Pseudo Genes (ambiguous residues)::0 of 80
Pseudo Genes (frameshifted)::34 of 80
Pseudo Genes (incomplete)::49 of 80
Pseudo Genes (internal stop)::31 of 80
Pseudo Genes (multiple problems)::32 of 80
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,988,928
Total ungapped length	2,988,928
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP022930.1	=	NZ_CP022930.1
Plasmid pEdBDGP3A	CP022931.1	=	NZ_CP022931.1

Molecule	Total Length
All	2,988,928
Chromosome	2,983,334
Plasmid pEdBDGP3A	5,594

	ANI	Query coverage	Subject coverage
Declared type	98.41	85.48	82.53
Best-match type	98.41	85.48	82.53

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM227793v1

See Genome Information for Enterococcus durans

Pathogen Detection Resources

There are 171 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result