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ASM255464v1

Organism name:
Yersinia pseudotuberculosis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_416
BioSample:
SAMN07312460
BioProject:
PRJNA231221
Submitter:
University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:
2017/10/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002554645.1 (latest)
RefSeq assembly accession:
GCF_002554645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PDEJ01
Assembly method:
SMRT v. 2.3.0; HGAP v. 3
Genome coverage:
898x
Sequencing technology:
PacBio; Illumina

IDs: 1330051 [UID] 5362748 [GenBank] 5412948 [RefSeq]

See Genome Information for Yersinia pseudotuberculosis

There are 329 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/11/2017 10:24:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,637
CDS (total)::4,525
Genes (coding)::4,268
CDS (coding)::4,268
Genes (RNA)::112
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::79
ncRNAs::11
Pseudo Genes (total)::257
Pseudo Genes (ambiguous residues)::0 of 257
Pseudo Genes (frameshifted)::143 of 257
Pseudo Genes (incomplete)::117 of 257
Pseudo Genes (internal stop)::46 of 257
Pseudo Genes (multiple problems)::45 of 257
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,994,213
Total ungapped length4,994,213
Number of contigs3
Contig N504,927,747
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,994,21334,994,2134,927,74700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia pseudotuberculosisYersinia pseudotuberculosis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900637475.1Yersinia pseudotuberculosissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637475.1Yersinia pseudotuberculosissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2187.4594.73
Best-match type99.2187.4594.73

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna