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ASM260810v1

Organism name:
Nostoc linckia z6 (cyanobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: z6
BioSample:
SAMN03338903
BioProject:
PRJNA274736
Submitter:
The University of Hong Kong
Date:
2017/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002608105.1 (latest)
RefSeq assembly accession:
GCF_002608105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LAHB01
Assembly method:
A5-Miseq v. 20141120
Expected final version:
yes
Genome coverage:
125.12x
Sequencing technology:
Illumina MiSeq

IDs: 1356751 [UID] 5453158 [GenBank] 5481888 [RefSeq]

See Genome Information for Nostoc linckia

There are 17 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/23/2015 12:14:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10 (rev. 462191)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::7,569
CDS::7,035
Pseudo Genes::442
CRISPR Arrays::13
rRNAs::6 (5S, 16S, 23S)
tRNAs::85
ncRNA::1
Frameshifted Genes::30
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,014,207
Total ungapped length9,014,089
Gaps between scaffolds0
Number of scaffolds138
Scaffold N50112,954
Scaffold L5026
Number of contigs141
Contig N50108,283
Contig L5027
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)138

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,014,2071389,014,089112,95430

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nostoc linckia z6Nostoc linckia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019359545.1Desmonostoc geniculatumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.1547.6158.31

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna