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Source database (GenBank or RefSeq) File type

Oar_rambouillet_v1.0

Organism name:

Ovis aries (sheep)

Infraspecific name:

Breed: Rambouillet

Infraspecific name:

Strain: OAR_USU_Benz2616

Sex:

female

BioSample:

SAMEA104496890

BioProject:

PRJNA414087

Submitter:

Baylor College of Medicine Human Genome Sequencing Center

Date:

2017/11/02

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_002742125.1 (latest)

RefSeq assembly accession:

GCF_002742125.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

PEKD01

Assembly method:

celera v. 8.2; Phase PGA v. 1.0; PBJelly2 v. 14.9.9; Pilon v. 1.8; Chromosomer v. 0.1.4

Expected final version:

Genome coverage:

126.0x

Sequencing technology:

HiSeq X Ten; PacBio RS II

IDs: 1424411 [UID] 5602828 [GenBank] 8351248 [RefSeq]

See Genome Information for Ovis aries

Pathogen Detection Resources

There are 58 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002742125.1	≠	GCF_002742125.1	Oar_rambouillet_v1.0	Chromosome	Latest GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	2,869,897,780
Total ungapped length	2,869,514,717
Gaps between scaffolds	0
Number of scaffolds	2,640
Scaffold N50	107,697,089
Scaffold L50	8
Number of contigs	7,485
Contig N50	2,572,683
Contig L50	313
Total number of chromosomes and plasmids	27
Number of component sequences (WGS or clone)	7,485

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM008472.1	=	NC_040252.1	0
Chromosome 2	CM008473.1	=	NC_040253.1	0
Chromosome 3	CM008474.1	=	NC_040254.1	0
Chromosome 4	CM008475.1	=	NC_040255.1	0
Chromosome 5	CM008476.1	=	NC_040256.1	0
Chromosome 6	CM008477.1	=	NC_040257.1	0
Chromosome 7	CM008478.1	=	NC_040258.1	0
Chromosome 8	CM008479.1	=	NC_040259.1	0
Chromosome 9	CM008480.1	=	NC_040260.1	0
Chromosome 10	CM008481.1	=	NC_040261.1	0
Chromosome 11	CM008482.1	=	NC_040262.1	0
Chromosome 12	CM008483.1	=	NC_040263.1	0
Chromosome 13	CM008484.1	=	NC_040264.1	0
Chromosome 14	CM008485.1	=	NC_040265.1	0
Chromosome 15	CM008486.1	=	NC_040266.1	0
Chromosome 16	CM008487.1	=	NC_040267.1	0
Chromosome 17	CM008488.1	=	NC_040268.1	0
Chromosome 18	CM008489.1	=	NC_040269.1	0
Chromosome 19	CM008490.1	=	NC_040270.1	0
Chromosome 20	CM008491.1	=	NC_040271.1	0
Chromosome 21	CM008492.1	=	NC_040272.1	0
Chromosome 22	CM008493.1	=	NC_040273.1	0
Chromosome 23	CM008494.1	=	NC_040274.1	0
Chromosome 24	CM008495.1	=	NC_040275.1	0
Chromosome 25	CM008496.1	=	NC_040276.1	0
Chromosome 26	CM008497.1	=	NC_040277.1	0
Chromosome X	CM008498.1	=	NC_040278.1	0
unplaced	n/a	n/a	n/a	2,613

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,869,897,780	2,640	2,869,514,717	107,697,089	4,845
Chromosome 1	301,310,028	1	301,260,237	301,310,028	629
Chromosome 2	265,688,840	1	265,645,336	265,688,840	531
Chromosome 3	241,140,967	1	241,115,621	241,140,967	323
Chromosome 4	130,071,916	1	130,047,814	130,071,916	301
Chromosome 5	117,625,568	1	117,612,218	117,625,568	168
Chromosome 6	129,788,820	1	129,774,512	129,788,820	176
Chromosome 7	107,697,089	1	107,682,178	107,697,089	181
Chromosome 8	98,768,167	1	98,757,030	98,768,167	134
Chromosome 9	104,713,370	1	104,699,853	104,713,370	169
Chromosome 10	97,206,448	1	97,191,642	97,206,448	193
Chromosome 11	60,977,283	1	60,973,498	60,977,283	53
Chromosome 12	84,520,005	1	84,508,454	84,520,005	147
Chromosome 13	87,256,641	1	87,249,890	87,256,641	83
Chromosome 14	71,110,528	1	71,102,788	71,110,528	108
Chromosome 15	90,320,817	1	90,308,441	90,320,817	146
Chromosome 16	78,351,213	1	78,337,458	78,351,213	171
Chromosome 17	82,584,647	1	82,566,886	82,584,647	227
Chromosome 18	70,857,294	1	70,846,385	70,857,294	145
Chromosome 19	62,707,585	1	62,700,738	62,707,585	87
Chromosome 20	55,937,558	1	55,931,411	55,937,558	78
Chromosome 21	52,946,817	1	52,938,622	52,946,817	116
Chromosome 22	55,669,323	1	55,663,382	55,669,323	70
Chromosome 23	68,305,172	1	68,293,817	68,305,172	148
Chromosome 24	43,079,387	1	43,075,952	43,079,387	42
Chromosome 25	47,656,618	1	47,651,933	47,656,618	65
Chromosome 26	49,387,814	1	49,380,427	49,387,814	90
Chromosome X	153,341,986	1	153,325,490	153,341,986	212
unplaced	60,875,879	2,613	60,872,704	23,610	52

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Oar_rambouillet_v1.0

See Genome Information for Ovis aries

Pathogen Detection Resources

There are 58 assemblies for this organism

History (Show revision history)

Comment

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