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Source database (GenBank or RefSeq) File type

O_europaea_v1

Organism name:

Olea europaea var. sylvestris (wild olive)

BioSample:

SAMN05943011

BioProject:

PRJNA350614

Submitter:

International Olive Genome Consortium

Date:

2017/11/03

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_002742605.1 (latest)

RefSeq assembly accession:

GCF_002742605.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

MSRW01

Assembly method:

SOAPdenovo v. 2

Expected final version:

yes

Genome coverage:

220.0x

Sequencing technology:

Illumina HiSeq

IDs: 1424741 [UID] 5603498 [GenBank] 5634388 [RefSeq]

See Genome Information for Olea europaea

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002742605.1	≠	GCF_002742605.1	O_europaea_v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,141,145,264
Total ungapped length	1,031,661,325
Gaps between scaffolds	0
Number of scaffolds	41,226
Scaffold N50	12,567,911
Scaffold L50	23
Number of contigs	83,944
Contig N50	48,313
Contig L50	5,797
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	41,226

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM008515.1	=	NC_036237.1	0
Chromosome 2	CM008516.1	=	NC_036238.1	0
Chromosome 3	CM008517.1	=	NC_036239.1	0
Chromosome 4	CM008518.1	=	NC_036240.1	0
Chromosome 5	CM008519.1	=	NC_036241.1	0
Chromosome 6	CM008520.1	=	NC_036242.1	0
Chromosome 7	CM008521.1	=	NC_036243.1	0
Chromosome 8	CM008522.1	=	NC_036244.1	0
Chromosome 9	CM008523.1	=	NC_036245.1	0
Chromosome 10	CM008524.1	=	NC_036246.1	0
Chromosome 11	CM008525.1	=	NC_036247.1	0
Chromosome 12	CM008526.1	=	NC_036248.1	0
Chromosome 13	CM008527.1	=	NC_036249.1	0
Chromosome 14	CM008528.1	=	NC_036250.1	0
Chromosome 15	CM008529.1	=	NC_036251.1	0
Chromosome 16	CM008530.1	=	NC_036252.1	0
Chromosome 17	CM008531.1	=	NC_036253.1	0
Chromosome 18	CM008532.1	=	NC_036254.1	0
Chromosome 19	CM008533.1	=	NC_036255.1	0
Chromosome 20	CM008534.1	=	NC_036256.1	0
Chromosome 21	CM008535.1	=	NC_036257.1	0
Chromosome 22	CM008536.1	=	NC_036258.1	0
Chromosome 23	CM008537.1	=	NC_036259.1	0
unplaced	n/a	n/a	n/a	41,202

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,140,989,389	41,225	1,031,505,450	12,567,911	42,718
Chromosome 1	34,969,289	1	32,276,326	34,969,289	1,230
Chromosome 2	31,055,900	1	28,794,284	31,055,900	1,153
Chromosome 3	24,942,889	1	22,939,600	24,942,889	967
Chromosome 4	20,939,557	1	18,816,769	20,939,557	852
Chromosome 5	16,728,162	1	15,438,371	16,728,162	613
Chromosome 6	29,748,804	1	27,175,100	29,748,804	1,136
Chromosome 7	26,763,932	1	24,621,741	26,763,932	1,028
Chromosome 8	21,188,216	1	19,252,654	21,188,216	812
Chromosome 9	15,806,762	1	14,615,021	15,806,762	596
Chromosome 10	46,026,434	1	43,121,190	46,026,434	1,531
Chromosome 11	37,425,940	1	34,526,293	37,425,940	1,395
Chromosome 12	31,322,855	1	28,777,166	31,322,855	1,245
Chromosome 13	29,871,022	1	27,757,738	29,871,022	1,069
Chromosome 14	17,301,818	1	16,016,843	17,301,818	636
Chromosome 15	31,897,487	1	29,850,538	31,897,487	1,052
Chromosome 16	21,003,989	1	19,875,472	21,003,989	663
Chromosome 17	24,659,992	1	23,432,799	24,659,992	669
Chromosome 18	31,788,380	1	29,522,986	31,788,380	1,143
Chromosome 19	13,387,386	1	12,404,517	13,387,386	511
Chromosome 20	20,086,275	1	18,863,131	20,086,275	644
Chromosome 21	18,225,190	1	16,747,229	18,225,190	741
Chromosome 22	15,403,796	1	14,132,050	15,403,796	583
Chromosome 23	12,567,911	1	11,819,794	12,567,911	409
unplaced	567,877,403	41,202	500,727,838	173,717	22,040

Assembly

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O_europaea_v1

See Genome Information for Olea europaea

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear