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Source database (GenBank or RefSeq) File type

EquCab3.0

Organism name:

Equus caballus (horse)

Infraspecific name:

Breed: thoroughbred

Isolate:

Twilight

Sex:

female

BioSample:

SAMN02953672

BioProject:

PRJNA421018

Submitter:

University of Louisville

Date:

2018/01/05

Synonyms:

equCab3

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_002863925.1 (latest)

RefSeq assembly accession:

GCF_002863925.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

PJAA01

Assembly method:

Celera Assembler v. 2017; HiRise v. 2017

Expected final version:

yes

Genome coverage:

88.0x

Sequencing technology:

Sanger; Illumina HiSeq; PacBio

IDs: 1512011 [UID] 5843558 [GenBank] 5863628 [RefSeq]

See Genome Information for Equus caballus

Pathogen Detection Resources

There are 15 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002863925.1	≠	GCF_002863925.1	EquCab3.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,506,966,135
Total ungapped length	2,497,530,671
Gaps between scaffolds	0
Number of scaffolds	4,701
Scaffold N50	87,230,776
Scaffold L50	12
Number of contigs	10,987
Contig N50	1,502,753
Contig L50	462
Total number of chromosomes and plasmids	33
Number of component sequences (WGS or clone)	4,701

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM009148.1	=	NC_009144.3	0
Chromosome 2	CM009149.1	=	NC_009145.3	0
Chromosome 3	CM009150.1	=	NC_009146.3	0
Chromosome 4	CM009151.1	=	NC_009147.3	0
Chromosome 5	CM009152.1	=	NC_009148.3	0
Chromosome 6	CM009153.1	=	NC_009149.3	0
Chromosome 7	CM009154.1	=	NC_009150.3	0
Chromosome 8	CM009155.1	=	NC_009151.3	0
Chromosome 9	CM009156.1	=	NC_009152.3	0
Chromosome 10	CM009157.1	=	NC_009153.3	0
Chromosome 11	CM009158.1	=	NC_009154.3	0
Chromosome 12	CM009159.1	=	NC_009155.3	0
Chromosome 13	CM009160.1	=	NC_009156.3	0
Chromosome 14	CM009161.1	=	NC_009157.3	0
Chromosome 15	CM009162.1	=	NC_009158.3	0
Chromosome 16	CM009163.1	=	NC_009159.3	0
Chromosome 17	CM009164.1	=	NC_009160.3	0
Chromosome 18	CM009165.1	=	NC_009161.3	0
Chromosome 19	CM009166.1	=	NC_009162.3	0
Chromosome 20	CM009167.1	=	NC_009163.3	0
Chromosome 21	CM009168.1	=	NC_009164.3	0
Chromosome 22	CM009169.1	=	NC_009165.3	0
Chromosome 23	CM009170.1	=	NC_009166.3	0
Chromosome 24	CM009171.1	=	NC_009167.3	0
Chromosome 25	CM009172.1	=	NC_009168.3	0
Chromosome 26	CM009173.1	=	NC_009169.3	0
Chromosome 27	CM009174.1	=	NC_009170.3	0
Chromosome 28	CM009175.1	=	NC_009171.3	0
Chromosome 29	CM009176.1	=	NC_009172.3	0
Chromosome 30	CM009177.1	=	NC_009173.3	0
Chromosome 31	CM009178.1	=	NC_009174.3	0
Chromosome X	CM009179.1	=	NC_009175.3	0
unplaced	n/a	n/a	n/a	4,668

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,506,949,475	4,700	2,497,514,011	87,230,776	6,286
Chromosome 1	188,260,577	1	188,023,926	188,260,577	308
Chromosome 2	121,350,024	1	121,251,615	121,350,024	173
Chromosome 3	121,351,753	1	121,263,260	121,351,753	126
Chromosome 4	109,462,549	1	109,357,821	109,462,549	120
Chromosome 5	96,759,418	1	96,621,999	96,759,418	126
Chromosome 6	87,230,776	1	87,147,154	87,230,776	124
Chromosome 7	100,787,686	1	100,630,806	100,787,686	190
Chromosome 8	97,563,019	1	97,476,194	97,563,019	136
Chromosome 9	85,793,548	1	85,611,088	85,793,548	154
Chromosome 10	85,155,674	1	84,952,090	85,155,674	186
Chromosome 11	61,676,917	1	61,641,178	61,676,917	100
Chromosome 12	36,992,759	1	36,676,873	36,992,759	226
Chromosome 13	43,784,481	1	43,695,799	43,784,481	99
Chromosome 14	94,600,235	1	94,492,032	94,600,235	96
Chromosome 15	92,851,403	1	92,777,303	92,851,403	122
Chromosome 16	88,962,352	1	88,911,319	88,962,352	98
Chromosome 17	80,722,430	1	80,689,860	80,722,430	54
Chromosome 18	82,641,348	1	82,575,523	82,641,348	94
Chromosome 19	62,681,739	1	62,588,858	62,681,739	82
Chromosome 20	65,343,332	1	65,280,924	65,343,332	81
Chromosome 21	58,984,458	1	58,846,024	58,984,458	93
Chromosome 22	50,928,189	1	50,884,831	50,928,189	92
Chromosome 23	55,556,184	1	55,463,284	55,556,184	78
Chromosome 24	48,288,683	1	48,222,620	48,288,683	99
Chromosome 25	40,282,968	1	40,204,330	40,282,968	69
Chromosome 26	43,147,642	1	43,120,801	43,147,642	64
Chromosome 27	40,254,690	1	40,206,315	40,254,690	67
Chromosome 28	47,348,498	1	47,304,428	47,348,498	70
Chromosome 29	34,776,120	1	34,736,565	34,776,120	56
Chromosome 30	31,395,959	1	31,360,532	31,395,959	57
Chromosome 31	26,001,039	1	25,996,820	26,001,039	24
Chromosome X	128,206,784	1	127,806,792	128,206,784	299
unplaced	97,806,241	4,668	91,695,047	84,212	2,523

Assembly

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EquCab3.0

See Genome Information for Equus caballus

Pathogen Detection Resources

There are 15 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear