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cyaCae2

Organism name:
Cyanistes caeruleus (blue tit)
Isolate:
BT333_1
Sex:
male
BioSample:
SAMN03734925
BioProject:
PRJNA284903
Submitter:
Dr. Bernd Tmmermann, NGS core facility, MPI Molecular Genetics
Date:
2018/01/26
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002901205.1 (latest)
RefSeq assembly accession:
GCF_002901205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PDCF01
Assembly method:
Celera Assembler v. 7; IDBAUD v. MAY-2014
Expected final version:
yes
Genome coverage:
40.0x
Sequencing technology:
Illumina HiSeq

IDs: 1537131 [UID] 5938578 [GenBank] 5990378 [RefSeq]

See Genome Information for Cyanistes caeruleus

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,186,980,630
Total ungapped length1,098,916,372
Gaps between scaffolds0
Number of scaffolds29,297
Scaffold N5016,846,143
Scaffold L5022
Number of contigs50,541
Contig N50105,778
Contig L502,815
Total number of chromosomes and plasmids31
Number of component sequences (WGS or clone)29,297

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Assembly Information

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PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002901235.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/an/a69
Chromosome 2n/an/an/a61
Chromosome 3n/an/an/a37
Chromosome 4n/an/an/a36
Chromosome 5n/an/an/a27
Chromosome 6n/an/an/a15
Chromosome 7n/an/an/a16
Chromosome 8n/an/an/a11
Chromosome 9n/an/an/a8
Chromosome 10n/an/an/a5
Chromosome 11n/an/an/a8
Chromosome 12n/an/an/a5
Chromosome 13n/an/an/a10
Chromosome 14n/an/an/a5
Chromosome 15n/an/an/a3
Chromosome 16n/an/an/a1
Chromosome 17n/an/an/a2
Chromosome 18n/an/an/a5
Chromosome 19n/an/an/a7
Chromosome 20n/an/an/a5
Chromosome 21n/an/an/a3
Chromosome 22n/an/an/a4
Chromosome 23n/an/an/a3
Chromosome 24n/an/an/a2
Chromosome 25n/an/an/a5
Chromosome 26n/an/an/a5
Chromosome 27n/an/an/a2
Chromosome 28n/an/an/a3
Chromosome LGE22C19W28n/an/an/a2
Chromosome LGE64n/an/an/a1
Chromosome Zn/an/an/a28
unplacedn/an/an/a28,903

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,186,980,63029,2971,098,916,37216,846,14321,2440
Chromosome 1AllAssembled moleculeUnlocalized scaffolds200,687,0160200,687,01669069187,444,4340187,444,43429,622,283029,622,2832,61602,616000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds161,047,7660161,047,76661061151,278,8290151,278,82921,617,949021,617,9492,05902,059000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds120,868,6270120,868,62737037113,881,4320113,881,43226,480,611026,480,6111,65701,657000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds97,500,742097,500,7423603690,966,954090,966,95412,922,972012,922,9721,50001,500000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds66,234,454066,234,4542702761,800,963061,800,96317,382,997017,382,9971,06601,066000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds37,850,002037,850,0021501534,973,352034,973,35224,702,934024,702,9346170617000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds40,557,160040,557,1601601637,759,395037,759,39537,076,263037,076,2636040604000
Chromosome 8AllAssembled moleculeUnlocalized scaffolds33,328,401033,328,4011101130,950,173030,950,17318,659,498018,659,4985920592000
Chromosome 9AllAssembled moleculeUnlocalized scaffolds25,846,449025,846,44980824,077,209024,077,20918,512,997018,512,9974490449000
Chromosome 10AllAssembled moleculeUnlocalized scaffolds20,963,984020,963,98450519,294,933019,294,93320,953,881020,953,8814220422000
Chromosome 11AllAssembled moleculeUnlocalized scaffolds21,786,480021,786,48080820,078,029020,078,02919,542,292019,542,2923950395000
Chromosome 12AllAssembled moleculeUnlocalized scaffolds21,478,369021,478,36950520,231,053020,231,05321,469,519021,469,5193800380000
Chromosome 13AllAssembled moleculeUnlocalized scaffolds18,723,719018,723,7191001017,237,692017,237,6929,957,24709,957,2473810381000
Chromosome 14AllAssembled moleculeUnlocalized scaffolds16,866,791016,866,79150515,278,415015,278,41516,846,143016,846,1433930393000
Chromosome 15AllAssembled moleculeUnlocalized scaffolds14,380,110014,380,11030312,864,592012,864,59214,375,695014,375,6953620362000
Chromosome 16AllAssembled moleculeUnlocalized scaffolds375,4170375,417101207,3340207,334375,4170375,41726026000
Chromosome 17AllAssembled moleculeUnlocalized scaffolds11,025,940011,025,9402029,769,97909,769,97910,909,061010,909,0612920292000
Chromosome 18AllAssembled moleculeUnlocalized scaffolds12,728,574012,728,57450511,165,611011,165,61112,013,002012,013,0023260326000
Chromosome 19AllAssembled moleculeUnlocalized scaffolds10,453,198010,453,1987079,248,31409,248,31410,439,848010,439,8482840284000
Chromosome 20AllAssembled moleculeUnlocalized scaffolds15,782,126015,782,12650514,078,176014,078,17610,690,660010,690,6603790379000
Chromosome 21AllAssembled moleculeUnlocalized scaffolds9,736,46809,736,4683037,044,90107,044,9017,020,39207,020,3923080308000
Chromosome 22AllAssembled moleculeUnlocalized scaffolds4,825,91904,825,9194044,003,23304,003,2334,815,56204,815,5622460246000
Chromosome 23AllAssembled moleculeUnlocalized scaffolds6,629,05206,629,0523035,522,19605,522,1966,621,44006,621,4403330333000
Chromosome 24AllAssembled moleculeUnlocalized scaffolds7,020,10407,020,1042026,473,74106,473,7417,017,31407,017,3141930193000
Chromosome 25AllAssembled moleculeUnlocalized scaffolds2,900,01302,900,0135051,724,67101,724,6712,890,53802,890,5382070207000
Chromosome 26AllAssembled moleculeUnlocalized scaffolds7,063,93507,063,9355055,819,43905,819,4397,010,97607,010,9763450345000
Chromosome 27AllAssembled moleculeUnlocalized scaffolds5,559,79605,559,7962024,040,88304,040,8835,399,60305,399,6032970297000
Chromosome 28AllAssembled moleculeUnlocalized scaffolds6,005,82306,005,8233034,578,73204,578,7325,973,88205,973,8823400340000
Chromosome LGE22C19W28AllAssembled moleculeUnlocalized scaffolds2,768,90102,768,9012021,553,31201,553,3122,767,45902,767,4591950195000
Chromosome LGE64AllAssembled moleculeUnlocalized scaffolds40,056040,0561015,76105,76140,056040,056202000
Chromosome ZAllAssembled moleculeUnlocalized scaffolds81,397,304081,397,3042802875,087,504075,087,50411,796,698011,796,6981,29001,290000
unplacedAssembled molecule104,547,93428,903100,475,1305,0612,6880