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ASM293703v1

Organism name:
Paracoccus denitrificans (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ISTOD1
BioSample:
SAMN08369766
BioProject:
PRJNA430338
Submitter:
Jawaharlal Nehru University
Date:
2018/02/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002937035.1 (latest)
RefSeq assembly accession:
GCF_002937035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PPGA01
Assembly method:
SPAdes v. 2017-11-14
Expected final version:
yes
Genome coverage:
578.0x
Sequencing technology:
Illumina HiSeq

IDs: 1565921 [UID] 6036078 [GenBank] 6064288 [RefSeq]

See Genome Information for Paracoccus denitrificans

There are 17 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Miss Kristina Medhi, Lab 201, School of Environmental Sciences, JNU, New Delhi, 110067.

Global statistics

Total sequence length4,901,949
Total ungapped length4,901,510
Gaps between scaffolds0
Number of scaffolds63
Scaffold N50329,583
Scaffold L506
Number of contigs68
Contig N50208,161
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)63

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,901,949634,901,510329,58350

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paracoccus denitrificansParacoccus denitrificans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004063735.1Paracoccus denitrificanstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004063735.1Paracoccus denitrificanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9587.2881.61
Best-match type98.9587.2881.61

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna