U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Dvir_v2.0

Organism name:
Diabrotica virgifera virgifera (western corn rootworm)
Isolate:
Ped12-6-A-3
Sex:
female
BioSample:
SAMN08631342
BioProject:
PRJNA432972
Submitter:
University of Illinois at Urbana-Champaign
Date:
2018/10/15
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_003013835.2 (latest)
RefSeq assembly accession:
GCF_003013835.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PXJM02
Assembly method:
SOAPdenovo v. 2013; LRNA_Scaffolder v. 2017; Dovetail: Chicago v. 2018
Expected final version:
yes
Genome coverage:
50.0x
Sequencing technology:
Illumina HiSeq

IDs: 2166281 [UID] 8078928 [GenBank] 8651378 [RefSeq]

See Genome Information for Diabrotica virgifera

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

In April 2022 the genome was updated 447 genes, 512 mRNAs, and 478 CDS. This annotation was created by community annotators at the i5k Workspace@NAL for the purpose of being incorporated into updated RefSeq annotation.

Global statistics

Total sequence length2,418,073,815
Total ungapped length1,850,692,199
Gaps between scaffolds0
Number of scaffolds87,712
Scaffold N50489,108
Scaffold L501,128
Number of contigs585,680
Contig N506,238
Contig L5084,252
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)585,680

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,418,073,81587,7121,850,692,199489,108497,9680