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ASM301803v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 2015C-4944
BioSample:
SAMN04482320
BioProject:
PRJNA218110
Submitter:
CDC
Date:
2018/03/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003018035.1 (latest)
RefSeq assembly accession:
GCF_003018035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
86.476x
Sequencing technology:
PacBio

IDs: 1651061 [UID] 6291378 [GenBank] 6307258 [RefSeq]

See Genome Information for Escherichia coli

There are 264705 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/28/2023 06:08:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,076
CDSs (total)::5,937
Genes (coding)::5,596
CDSs (with protein)::5,596
Genes (RNA)::139
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::106
ncRNAs::11
Pseudo Genes (total)::341
CDSs (without protein)::341
Pseudo Genes (ambiguous residues)::0 of 341
Pseudo Genes (frameshifted)::122 of 341
Pseudo Genes (incomplete)::208 of 341
Pseudo Genes (internal stop)::78 of 341
Pseudo Genes (multiple problems)::61 of 341
Pseudo Genes (short protein)::3 of 341
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,901,472
Total ungapped length5,901,472
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003018045.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP027390.1=NZ_CP027390.1
Plasmid unnamedCP027391.1=NZ_CP027391.1

Assembly statistics

MoleculeTotal
Length
All5,901,472
Chromosome 5,802,748
Plasmid unnamed98,724

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000459055.1Escherichia coli HVH 200 (4-4449924)claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000459055.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9176.9186.13
Best-match type98.9176.9186.13

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna