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ASM301845v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 97-3250
BioSample:
SAMN08638904
BioProject:
PRJNA218110
Submitter:
CDC
Date:
2018/03/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003018455.1 (latest)
RefSeq assembly accession:
GCF_003018455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
113.492x
Sequencing technology:
PacBio

IDs: 1651261 [UID] 6291798 [GenBank] 6306798 [RefSeq]

See Genome Information for Escherichia coli

There are 265156 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/29/2023 01:34:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,382
CDSs (total)::6,247
Genes (coding)::5,871
CDSs (with protein)::5,871
Genes (RNA)::135
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::102
ncRNAs::11
Pseudo Genes (total)::376
CDSs (without protein)::376
Pseudo Genes (ambiguous residues)::0 of 376
Pseudo Genes (frameshifted)::158 of 376
Pseudo Genes (incomplete)::215 of 376
Pseudo Genes (internal stop)::78 of 376
Pseudo Genes (multiple problems)::68 of 376
Pseudo Genes (short protein)::3 of 376
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,156,163
Total ungapped length6,156,163
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003018465.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP027599.1=NZ_CP027599.1
Plasmid unnamed1CP027600.1=NZ_CP027600.1
Plasmid unnamed2CP027601.1=NZ_CP027601.1

Assembly statistics

MoleculeTotal
Length
All6,156,163
Chromosome 5,942,969
Plasmid unnamed1120,604
Plasmid unnamed292,590

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000010385.1Escherichia coli SE11claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000010385.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0173.7888.10
Best-match type99.0173.7888.10

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna