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ASM301855v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 2013C-4225
BioSample:
SAMN08579596
BioProject:
PRJNA218110
Submitter:
CDC
Date:
2018/03/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003018555.1 (latest)
RefSeq assembly accession:
GCF_003018555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
76.725x
Sequencing technology:
PacBio

IDs: 1651311 [UID] 6291898 [GenBank] 6308118 [RefSeq]

See Genome Information for Escherichia coli

There are 149885 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/12/2021 12:19:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,762
CDSs (total)::5,633
Genes (coding)::5,368
CDSs (with protein)::5,368
Genes (RNA)::129
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::96
ncRNAs::11
Pseudo Genes (total)::265
CDSs (without protein)::265
Pseudo Genes (ambiguous residues)::0 of 265
Pseudo Genes (frameshifted)::129 of 265
Pseudo Genes (incomplete)::123 of 265
Pseudo Genes (internal stop)::65 of 265
Pseudo Genes (multiple problems)::45 of 265
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,734,160
Total ungapped length5,734,160
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003018565.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP027577.1=NZ_CP027577.1
Plasmid unnamedCP027578.1=NZ_CP027578.1

Assembly statistics

MoleculeTotal
Length
All5,734,160
Chromosome 5,646,446
Plasmid unnamed87,714

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000734955.1Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775neotype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000734955.1Escherichia colineotype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1271.6182.44
Best-match type97.1271.6182.44

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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