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ASM301879v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 2012C-4606
BioSample:
SAMN04498549
BioProject:
PRJNA218110
Submitter:
CDC
Date:
2018/03/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003018795.1 (latest)
RefSeq assembly accession:
GCF_003018795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
80.59x
Sequencing technology:
PacBio

IDs: 1651431 [UID] 6292138 [GenBank] 6305498 [RefSeq]

See Genome Information for Escherichia coli

There are 148703 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/12/2021 12:31:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,763
CDSs (total)::5,632
Genes (coding)::5,349
CDSs (with protein)::5,349
Genes (RNA)::131
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::101
ncRNAs::8
Pseudo Genes (total)::283
CDSs (without protein)::283
Pseudo Genes (ambiguous residues)::0 of 283
Pseudo Genes (frameshifted)::143 of 283
Pseudo Genes (incomplete)::126 of 283
Pseudo Genes (internal stop)::68 of 283
Pseudo Genes (multiple problems)::46 of 283
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,725,796
Total ungapped length5,725,796
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003018805.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP027352.1=NZ_CP027352.1
Plasmid unnamed1CP027353.1=NZ_CP027353.1
Plasmid unnamed2CP027354.1=NZ_CP027354.1

Assembly statistics

MoleculeTotal
Length
All5,725,796
Chromosome 5,647,195
Plasmid unnamed120,881
Plasmid unnamed257,720

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000690815.1Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775neotype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000690815.1Escherichia colineotype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1172.0781.92
Best-match type97.1172.0781.92

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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