Format

Send to:

Choose Destination

Download Assembly



ASM301889v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: 2014C-3057
BioSample:
SAMN08579576
BioProject:
PRJNA218110
Submitter:
CDC
Date:
2018/03/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003018895.1 (latest)
RefSeq assembly accession:
GCF_003018895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
81.261x
Sequencing technology:
PacBio

IDs: 1651481 [UID] 6292238 [GenBank] 6305418 [RefSeq]

See Genome Information for Escherichia coli

There are 150056 assemblies for this organism

See more

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/12/2021 12:17:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,749
CDSs (total)::5,618
Genes (coding)::5,369
CDSs (with protein)::5,369
Genes (RNA)::131
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::98
ncRNAs::11
Pseudo Genes (total)::249
CDSs (without protein)::249
Pseudo Genes (ambiguous residues)::0 of 249
Pseudo Genes (frameshifted)::109 of 249
Pseudo Genes (incomplete)::124 of 249
Pseudo Genes (internal stop)::68 of 249
Pseudo Genes (multiple problems)::46 of 249
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,700,435
Total ungapped length5,700,435
Total number of chromosomes and plasmids2

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003018905.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP027387.1=NZ_CP027387.1
Plasmid unnamedCP027386.1=NZ_CP027386.1

Assembly statistics

MoleculeTotal
Length
All5,700,435
Chromosome 5,645,983
Plasmid unnamed54,452

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000690815.1Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775neotype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000690815.1Escherichia colineotype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1072.4181.93
Best-match type97.1072.4181.93

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
Support Center