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Source database (GenBank or RefSeq) File type

ASM302076v1

Organism name:: Enterococcus faecium (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: AUSMDU00004142
BioSample:: SAMN08628412
BioProject:: PRJNA433676
Submitter:: University of Melbourne
Date:: 2018/03/27
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003020765.1 (latest)
RefSeq assembly accession:: GCF_003020765.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Canu v. 1.3
Expected final version:: no
Genome coverage:: 313.88x
Sequencing technology:: PacBio

IDs: 1652371 [UID] 6294788 [GenBank] 6308038 [RefSeq]

See Genome Information for Enterococcus faecium

Pathogen Detection Resources

There are 23391 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003020765.1	=	GCF_003020765.1	ASM302076v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::12/01/2023 04:03:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,158
CDSs (total)::3,067
Genes (coding)::2,959
CDSs (with protein)::2,959
Genes (RNA)::91
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::4
Pseudo Genes (total)::108
CDSs (without protein)::108
Pseudo Genes (ambiguous residues)::0 of 108
Pseudo Genes (frameshifted)::42 of 108
Pseudo Genes (incomplete)::67 of 108
Pseudo Genes (internal stop)::27 of 108
Pseudo Genes (multiple problems)::22 of 108
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,202,267
Total ungapped length	3,202,267
Total number of chromosomes and plasmids	5

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP027501.1	=	NZ_CP027501.1
Plasmid unnamed1	CP027502.1	=	NZ_CP027502.1
Plasmid unnamed2	CP027503.1	=	NZ_CP027503.1
Plasmid unnamed3	CP027504.1	=	NZ_CP027504.1
Plasmid unnamed4	CP027505.1	=	NZ_CP027505.1

Molecule	Total Length
All	3,202,267
Chromosome	2,912,017
Plasmid unnamed1	168,778
Plasmid unnamed2	54,738
Plasmid unnamed3	36,024
Plasmid unnamed4	30,710

	ANI	Query coverage	Subject coverage
Declared type	99.54	73.31	94.47
Best-match type	99.54	73.31	94.47

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ASM302076v1

See Genome Information for Enterococcus faecium

Pathogen Detection Resources

There are 23391 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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