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UOA_WB_1

Organism name:
Bubalus bubalis (water buffalo)
Infraspecific name:
Breed: Mediterranean
Sex:
female
BioSample:
SAMN08640746
BioProject:
PRJNA437177
Submitter:
University of Adelaide
Date:
2018/05/14
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_003121395.1 (latest)
RefSeq assembly accession:
GCF_003121395.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 1 unlocalized scaffold on chromosome MT
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
PZYV01
Assembly method:
Falcon-Unzip v. 1.8.7
Expected final version:
no
Genome coverage:
69.0x
Sequencing technology:
PacBio

IDs: 1699511 [UID] 6491898 [GenBank] 6500688 [RefSeq]

See Genome Information for Bubalus bubalis

Pathogen Detection Resources

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,655,776,128
Total ungapped length2,655,402,628
Gaps between scaffolds0
Number of scaffolds509
Scaffold N50117,219,835
Scaffold L509
Number of contigs919
Contig N5022,441,509
Contig L5036
Total number of chromosomes and plasmids26
Number of component sequences (WGS or clone)509

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_003121435.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM009840.1=NC_037545.10
Chromosome 2CM009841.1=NC_037546.10
Chromosome 3CM009842.1=NC_037547.10
Chromosome 4CM009843.1=NC_037548.10
Chromosome 5CM009844.1=NC_037549.10
Chromosome 6CM009845.1=NC_037550.10
Chromosome 7CM009846.1=NC_037551.10
Chromosome 8CM009847.1=NC_037552.10
Chromosome 9CM009848.1=NC_037553.10
Chromosome 10CM009849.1=NC_037554.10
Chromosome 11CM009850.1=NC_037555.10
Chromosome 12CM009851.1=NC_037556.10
Chromosome 13CM009852.1=NC_037557.10
Chromosome 14CM009853.1=NC_037558.10
Chromosome 15CM009854.1=NC_037559.10
Chromosome 16CM009855.1=NC_037560.10
Chromosome 17CM009856.1=NC_037561.10
Chromosome 18CM009857.1=NC_037562.10
Chromosome 19CM009858.1=NC_037563.10
Chromosome 20CM009859.1=NC_037564.10
Chromosome 21CM009860.1=NC_037565.10
Chromosome 22CM009861.1=NC_037566.10
Chromosome 23CM009862.1=NC_037567.10
Chromosome 24CM009863.1=NC_037568.10
Chromosome XCM009864.1=NC_037569.10
unplacedn/an/an/a483

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,655,764,4175082,655,390,917117,219,8354100
Chromosome 1202,105,9801202,095,930202,105,980120
Chromosome 2188,952,4771188,934,377188,952,477220
Chromosome 3175,630,8331175,605,183175,630,833270
Chromosome 4165,345,8881165,323,338165,345,888250
Chromosome 5127,681,9801127,658,430127,681,980260
Chromosome 6120,641,6591120,627,609120,641,659160
Chromosome 7117,219,8351117,208,835117,219,835110
Chromosome 8119,769,3481119,759,348119,769,348100
Chromosome 9110,236,9361110,223,886110,236,936150
Chromosome 10104,521,5081104,506,483104,521,508160
Chromosome 11102,289,3591102,278,359102,289,359110
Chromosome 12106,433,5511106,428,526106,433,55160
Chromosome 1390,503,546190,474,54690,503,546290
Chromosome 1483,509,883183,505,88383,509,88340
Chromosome 1582,162,863182,156,83882,162,86370
Chromosome 1684,651,441184,633,39184,651,441200
Chromosome 1773,313,739173,302,73973,313,739110
Chromosome 1865,927,732165,911,68265,927,732180
Chromosome 1971,842,292171,837,29271,842,29250
Chromosome 2068,863,396168,852,37168,863,396120
Chromosome 2160,877,646160,874,62160,877,64640
Chromosome 2262,062,344162,059,29462,062,34450
Chromosome 2351,760,919151,756,89451,760,91950
Chromosome 2442,448,106142,447,10642,448,10610
Chromosome X143,533,7941143,477,094143,533,794650
unplaced33,477,36248333,450,86282,711270
MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds11,711011,71110111,711011,71111,711011,711000000