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VulVul2.2

Organism name:
Vulpes vulpes (red fox)
Infraspecific name:
Strain: TameXAggressive cross
Sex:
male
BioSample:
SAMN06553695
BioProject:
PRJNA378561
Submitter:
University of Illinois at Urbana-Champaign
Date:
2018/05/25
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003160815.1 (latest)
RefSeq assembly accession:
GCF_003160815.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
NBDQ01
Assembly method:
SOAPdenovo v. 2.04.4
Expected final version:
yes
Genome coverage:
93.9x
Sequencing technology:
Illumina HiSeq

IDs: 1722631 [UID] 6552638 [GenBank] 6956668 [RefSeq]

See Genome Information for Vulpes vulpes

History (Show revision history)

Comment

Global statistics

Total sequence length2,421,568,072
Total ungapped length2,350,023,719
Gaps between scaffolds0
Number of scaffolds82,424
Scaffold N5012,472,085
Scaffold L5055
Number of contigs183,898
Contig N5055,450
Contig L5012,033
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)82,424

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,421,551,25982,4232,350,006,90612,472,085101,4740
MoleculeTotal
Length
Mitochondrion MT16,813