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ASM320293v1

Organism name:
Butyricicoccus sp. GAM44 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: JCM:32524
Infraspecific name:
Strain: GAM44
BioSample:
SAMD00113755
BioProject:
PRJDB6815
Submitter:
Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases
Date:
2018/06/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003202935.1 (latest)
RefSeq assembly accession:
GCF_003202935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BFBU01
Assembly method:
HGAP Assembly v. 3.0; Canu v. 1.4; minimap v. 0.2-r124; racon v. 1.1.0; circlator v. 1.5.3; Pilon v. 1.18; SPAdes v. 3.11.1; A5-miseq v. 20140604
Genome coverage:
250x
Sequencing technology:
PacBio RSII; MiSeq

IDs: 1740291 [UID] 6617978 [GenBank] 6647608 [RefSeq]

See Genome Information for Butyricicoccus sp. GAM44

History (Show revision history)

Comment

Global statistics

Total sequence length2,949,183
Total ungapped length2,949,183
Number of contigs4
Contig N502,682,118
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,949,18342,949,1832,682,11800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Butyricicoccus sp. GAM44Butyricicoccus sp. GAM44

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016586375.1Butyricicoccus faecihoministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.0373.4471.55

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna