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Source database (GenBank or RefSeq) File type

Tgel_1.0

Organism name:

Theropithecus gelada (gelada)

Isolate:

Dixy

Sex:

female

BioSample:

SAMN09197221

BioProject:

PRJNA470999

Submitter:

Kenneth Chiou's shared submissions

Date:

2018/06/19

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_003255815.1 (latest)

RefSeq assembly accession:

GCF_003255815.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

QGDE01

Assembly method:

Supernova v. APR-2018; 3D-DNA v. APR-2018

Expected final version:

yes

Genome coverage:

56.0x

Sequencing technology:

Illumina HiSeq

IDs: 1767811 [UID] 6694698 [GenBank] 6722658 [RefSeq]

See Genome Information for Theropithecus gelada

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003255815.1	≠	GCF_003255815.1	Tgel_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,889,630,685
Total ungapped length	2,842,438,356
Gaps between scaffolds	0
Number of scaffolds	15,308
Scaffold N50	130,230,028
Scaffold L50	9
Number of contigs	35,108
Contig N50	310,061
Contig L50	2,649
Total number of chromosomes and plasmids	23
Number of component sequences (WGS or clone)	15,308

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM009950.1	=	NC_037668.1	0
Chromosome 2	CM009951.1	=	NC_037669.1	0
Chromosome 3	CM009952.1	=	NC_037670.1	0
Chromosome 4	CM009953.1	=	NC_037671.1	0
Chromosome 5	CM009954.1	=	NC_037672.1	0
Chromosome 6	CM009955.1	=	NC_037673.1	0
Chromosome 7a	CM009956.1	=	NC_037674.1	0
Chromosome 7b	CM009957.1	=	NC_037675.1	0
Chromosome 8	CM009958.1	=	NC_037676.1	0
Chromosome 9	CM009959.1	=	NC_037677.1	0
Chromosome 10	CM009960.1	=	NC_037678.1	0
Chromosome 11	CM009961.1	=	NC_037679.1	0
Chromosome 12	CM009962.1	=	NC_037680.1	0
Chromosome 13	CM009963.1	=	NC_037681.1	0
Chromosome 14	CM009964.1	=	NC_037682.1	0
Chromosome 15	CM009965.1	=	NC_037683.1	0
Chromosome 16	CM009966.1	=	NC_037684.1	0
Chromosome 17	CM009967.1	=	NC_037685.1	0
Chromosome 18	CM009968.1	=	NC_037686.1	0
Chromosome 19	CM009969.1	=	NC_037687.1	0
Chromosome 20	CM009970.1	=	NC_037688.1	0
Chromosome X	CM009971.1	=	NC_037689.1	0
unplaced	n/a	n/a	n/a	15,285

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,889,614,139	15,307	2,842,421,810	130,230,028	19,800
Chromosome 1	222,973,213	1	219,661,538	222,973,213	1,452
Chromosome 2	194,193,292	1	192,349,832	194,193,292	980
Chromosome 3	183,260,707	1	181,146,578	183,260,707	1,097
Chromosome 4	170,232,041	1	167,989,787	170,232,041	935
Chromosome 5	186,847,797	1	184,463,274	186,847,797	1,017
Chromosome 6	177,691,375	1	174,702,913	177,691,375	980
Chromosome 7a	58,689,410	1	57,867,204	58,689,410	378
Chromosome 7b	108,639,790	1	106,750,624	108,639,790	672
Chromosome 8	147,341,205	1	145,149,597	147,341,205	867
Chromosome 9	130,230,028	1	127,890,775	130,230,028	773
Chromosome 10	96,765,312	1	95,030,412	96,765,312	820
Chromosome 11	129,236,938	1	127,409,524	129,236,938	852
Chromosome 12	118,892,792	1	117,447,587	118,892,792	624
Chromosome 13	107,931,652	1	106,802,848	107,931,652	598
Chromosome 14	126,097,711	1	124,169,815	126,097,711	775
Chromosome 15	111,397,652	1	109,333,949	111,397,652	746
Chromosome 16	77,165,238	1	75,239,008	77,165,238	771
Chromosome 17	92,848,679	1	91,668,515	92,848,679	494
Chromosome 18	72,621,969	1	72,042,371	72,621,969	375
Chromosome 19	58,110,696	1	55,592,998	58,110,696	1,058
Chromosome 20	77,542,005	1	76,214,637	77,542,005	596
Chromosome X	153,451,627	1	146,819,118	153,451,627	1,278
unplaced	87,453,010	15,285	86,678,906	9,966	1,662

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Tgel_1.0

See Genome Information for Theropithecus gelada

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear