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ASM332603v1

Organism name:
Cupriavidus necator (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CR12
BioSample:
SAMN08978824
BioProject:
PRJNA453450
Submitter:
Fujian Agriculture and Forestry University
Date:
2018/07/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003326035.1 (latest)
RefSeq assembly accession:
GCF_003326035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QDHA01
Assembly method:
CLC Genomic Workbench v. 10.1.1
Expected final version:
yes
Genome coverage:
50.0x
Sequencing technology:
Illumina HiSeq

IDs: 1822641 [UID] 6907468 [GenBank] 6921938 [RefSeq]

See Genome Information for Cupriavidus necator

There are 20 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/13/2018 11:07:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,788
CDS (total)::7,725
Genes (coding)::7,347
CDS (coding)::7,347
Genes (RNA)::63
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1 (23S)
partial rRNAs::1 (16S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::378
Pseudo Genes (ambiguous residues)::0 of 378
Pseudo Genes (frameshifted)::129 of 378
Pseudo Genes (incomplete)::302 of 378
Pseudo Genes (internal stop)::40 of 378
Pseudo Genes (multiple problems)::86 of 378
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,196,961
Total ungapped length8,196,961
Number of contigs253
Contig N5086,897
Contig L5030
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)253

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,196,9612538,196,96186,89700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Cupriavidus necatorCupriavidus necator

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000219215.1Cupriavidus necator N-1suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000219215.1Cupriavidus necatorsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.9575.0972.58
Best-match type96.9575.0972.58

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna