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ASM334480v1

Organism name:: Paracoccus versutus (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: MAL 1HM19
BioSample:: SAMN09702596
BioProject:: PRJNA482279
Submitter:: Abace
Date:: 2018/07/28
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_003344805.1 (latest)
RefSeq assembly accession:: GCF_003344805.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QPML01
Assembly method:: GS De Novo Assembler v. 2.6
Expected final version:: yes
Genome coverage:: 207.0x
Sequencing technology:: Illumina HiSeq

IDs: 1835481 [UID] 6959338 [GenBank] 6962648 [RefSeq]

See Genome Information for Paracoccus versutus

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003344805.1	=	GCF_003344805.1	ASM334480v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::07/23/2018 14:04:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,464
CDS (total)::5,404
Genes (coding)::5,204
CDS (coding)::5,204
Genes (RNA)::60
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::54
ncRNAs::3
Pseudo Genes (total)::200
Pseudo Genes (ambiguous residues)::7 of 200
Pseudo Genes (frameshifted)::84 of 200
Pseudo Genes (incomplete)::135 of 200
Pseudo Genes (internal stop)::22 of 200
Pseudo Genes (multiple problems)::44 of 200
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,427,451
Total ungapped length	5,421,754
Gaps between scaffolds	0
Number of scaffolds	245
Scaffold N50	73,532
Scaffold L50	24
Number of contigs	279
Contig N50	65,835
Contig L50	26
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	245

	ANI	Query coverage	Subject coverage
Declared type	98.37	89.01	85.79
Best-match type	98.37	89.01	85.79

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ASM334480v1

See Genome Information for Paracoccus versutus

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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